JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRPS7_chr17_75256879_75271376	0/0	t0003	476	3	2	1	0	0	0	copy fasta	MRPS7	chr17	75256879	75271376
MRPS7_chr17_75256879_75271376	0/0	t0004	476	1	1	0	0	0	0	copy fasta	MRPS7	chr17	75256879	75271376
MRPS7_chr17_75256879_75271376	0/0	t0005	476	1	1	0	0	0	0	copy fasta	MRPS7	chr17	75256879	75271376
MRPS7_chr17_75256879_75271376	0/0	t0006	476	1	0	0	0	0	1	copy fasta	MRPS7	chr17	75256879	75271376
MRPS7_chr17_75256879_75271376	0/0	t0007	476	1	0	0	1	0	0	copy fasta	MRPS7	chr17	75256879	75271376
MRPS9_chr2_105033069_105104960	1/0	t0001	224	330	69	46	163	12	39	copy fasta	MRPS9	chr2	105033069	105104960
MRPS9_chr2_105033069_105104960	0/1	t0002	224	64	13	18	21	4	7	copy fasta	MRPS9	chr2	105033069	105104960
MRRF_chr9_122259882_122336337	0/1	t0001	8788	38	2	6	28	0	1	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0002	8802	21	7	4	5	2	3	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0003	8804	18	5	3	6	0	4	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0004	8808	16	5	2	6	0	3	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	1/0	t0005	8806	10	1	4	3	0	1	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0006	8786	9	0	2	7	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0007	8812	6	1	2	2	0	1	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0008	8800	6	0	2	3	0	1	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0009	8810	5	5	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0010	8802	5	0	0	5	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0011	8786	5	0	0	5	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0012	8809	4	1	0	3	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0013	8798	4	1	0	2	1	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0014	8800	3	3	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0015	8814	3	0	0	2	0	1	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0016	8810	3	0	0	3	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0017	8811	3	0	1	2	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0018	8808	3	2	1	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0019	8806	3	3	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0020	8806	3	0	0	3	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0021	8802	3	0	0	3	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0022	8803	3	0	0	2	0	1	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0023	8800	3	0	0	3	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0024	8796	3	3	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0025	8816	2	0	0	2	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0026	8807	2	0	1	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0027	8802	2	2	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0028	8802	2	2	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0029	8798	2	0	0	2	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0030	8789	2	2	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0031	8787	2	0	1	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0032	8778	2	0	0	2	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0033	8790	1	0	1	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0034	8808	1	1	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0035	8806	1	1	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0036	8801	1	1	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0037	8814	1	0	0	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0038	8812	1	0	0	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0039	8801	1	1	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0040	8804	1	0	0	0	0	1	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0041	8806	1	1	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0042	8820	1	1	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0043	8818	1	0	0	1	0	0	copy fasta	MRRF	chr9	122259882	122336337