JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRRF_chr9_122259882_122336337	0/0	t0044	8816	1	0	0	0	0	1	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0045	8816	1	0	0	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0046	8814	1	0	0	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0047	8815	1	1	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0048	8811	1	1	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0049	8808	1	0	0	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0050	8810	1	0	0	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0051	8806	1	0	0	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0052	8806	1	0	0	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0053	8807	1	0	0	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0054	8792	1	0	0	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0055	8807	1	1	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0056	8807	1	0	1	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0057	8808	1	0	0	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0058	8805	1	1	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0059	8808	1	0	0	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0060	8804	1	0	1	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0061	8804	1	1	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0062	8804	1	0	0	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0063	8805	1	0	0	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0064	8800	1	1	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0065	8802	1	0	0	0	1	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0066	8802	1	0	1	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0067	8802	1	0	0	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0068	8802	1	1	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0069	8803	1	0	0	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0070	8801	1	1	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0071	8798	1	1	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0072	8800	1	0	1	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0073	8800	1	1	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0074	8800	1	0	0	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0075	8798	1	1	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0076	8794	1	1	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0077	8792	1	1	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0078	8790	1	0	0	0	0	1	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0079	8790	1	1	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0080	8786	1	0	1	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0081	8786	1	0	0	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0082	8788	1	0	0	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0083	8788	1	0	0	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0084	8788	1	0	0	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0085	8788	1	0	0	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0086	8788	1	0	0	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0087	8789	1	0	0	0	0	1	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0088	8789	1	0	0	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0089	8786	1	0	0	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0090	8787	1	0	0	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0091	8787	1	0	1	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0092	8822	1	0	1	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0093	8802	1	1	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337