JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRRF_chr9_122259882_122336337	0/0	t0094	8804	1	0	0	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0095	8824	1	0	0	1	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0096	8808	1	0	1	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0097	8804	1	1	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0098	8793	1	1	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0099	8791	1	1	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRRF_chr9_122259882_122336337	0/0	t0100	8792	1	1	0	0	0	0	copy fasta	MRRF	chr9	122259882	122336337
MRS2_chr6_24397936_24431190	0/0	t0001	2614	119	27	19	60	3	10	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/1	t0002	2608	117	29	22	42	11	12	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	t0003	2610	49	0	10	34	0	5	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	t0004	2613	37	7	3	22	0	5	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	t0005	2608	24	5	12	0	2	5	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	t0006	2614	19	0	1	18	0	0	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	t0007	2613	11	0	0	10	0	1	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	t0008	2609	11	9	2	0	0	0	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	t0009	2613	8	2	1	5	0	0	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	t0010	2606	7	4	0	3	0	0	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	1/0	t0011	2608	6	4	1	0	0	0	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	t0012	2609	5	1	4	0	0	0	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	t0013	2608	3	2	1	0	0	0	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	t0014	2345	2	1	1	0	0	0	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	t0015	2610	1	0	0	1	0	0	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	t0016	2606	1	0	1	0	0	0	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	t0017	2611	1	1	0	0	0	0	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	t0018	2614	1	1	0	0	0	0	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	t0019	2608	1	1	0	0	0	0	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	t0020	2608	1	0	0	1	0	0	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	t0021	2608	1	0	0	0	0	1	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	t0022	2614	1	0	0	0	0	1	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	t0023	2609	1	1	0	0	0	0	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	t0024	2614	1	1	0	0	0	0	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	t0025	2614	1	1	0	0	0	0	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	t0026	2611	1	1	0	0	0	0	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	t0027	2608	1	0	1	0	0	0	copy fasta	MRS2	chr6	24397936	24431190
MRS2_chr6_24397936_24431190	0/0	t0028	2608	1	0	1	0	0	0	copy fasta	MRS2	chr6	24397936	24431190
MRTFA_chr22_40405289_40641719	1/0	t0001	1427	163	69	25	36	9	23	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/1	t0002	1428	56	1	13	37	1	3	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	t0003	1427	23	0	0	23	0	0	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	t0004	1431	4	3	1	0	0	0	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	t0005	1428	4	0	0	0	2	2	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	t0006	1427	2	1	1	0	0	0	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	t0007	1427	1	1	0	0	0	0	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	t0008	1427	1	1	0	0	0	0	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	t0009	1427	1	1	0	0	0	0	copy fasta	MRTFA	chr22	40405289	40641719
MRTFA_chr22_40405289_40641719	0/0	t0010	1427	1	1	0	0	0	0	copy fasta	MRTFA	chr22	40405289	40641719
MRTFB_chr16_14066319_14271773	1/1	t0001	5505	84	9	10	51	3	9	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0002	5505	56	6	4	38	1	7	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0003	5505	24	23	1	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0004	5505	9	9	0	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0005	5505	9	0	0	9	0	0	copy fasta	MRTFB	chr16	14066319	14271773