JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MRTFB_chr16_14066319_14271773	0/0	t0006	5505	8	8	0	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0007	5505	7	7	0	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0008	5505	5	0	1	0	2	2	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0009	5505	5	4	1	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0010	5505	3	3	0	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0011	5505	3	0	0	3	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0012	5505	2	2	0	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0013	5505	2	0	2	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0014	5500	2	2	0	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0015	5500	1	1	0	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0016	5505	1	1	0	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0017	5505	1	1	0	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0018	5505	1	1	0	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0019	5505	1	0	1	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0020	5505	1	1	0	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0021	5505	1	1	0	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0022	5505	1	1	0	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0023	5505	1	0	1	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0024	5505	1	0	1	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0025	5505	1	1	0	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0026	5505	1	0	0	1	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0027	5505	1	1	0	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0028	5505	1	1	0	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0029	5505	1	1	0	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0030	5505	1	1	0	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0031	5505	1	0	0	1	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0032	5505	1	0	0	1	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0033	5505	1	1	0	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0034	5505	1	1	0	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTFB_chr16_14066319_14271773	0/0	t0035	5505	1	1	0	0	0	0	copy fasta	MRTFB	chr16	14066319	14271773
MRTO4_chr1_19246805_19265128	0/0	t0001	1330	252	48	49	111	13	31	copy fasta	MRTO4	chr1	19246805	19265128
MRTO4_chr1_19246805_19265128	0/0	t0002	1330	38	26	9	0	2	1	copy fasta	MRTO4	chr1	19246805	19265128
MRTO4_chr1_19246805_19265128	1/0	t0003	1330	33	2	10	17	1	2	copy fasta	MRTO4	chr1	19246805	19265128
MRTO4_chr1_19246805_19265128	0/0	t0004	1329	31	3	4	20	0	4	copy fasta	MRTO4	chr1	19246805	19265128
MRTO4_chr1_19246805_19265128	0/0	t0005	1328	13	0	2	7	0	4	copy fasta	MRTO4	chr1	19246805	19265128
MRTO4_chr1_19246805_19265128	0/0	t0006	1330	10	10	0	0	0	0	copy fasta	MRTO4	chr1	19246805	19265128
MRTO4_chr1_19246805_19265128	0/1	t0007	1329	5	0	2	0	0	2	copy fasta	MRTO4	chr1	19246805	19265128
MRTO4_chr1_19246805_19265128	0/0	t0008	1330	4	4	0	0	0	0	copy fasta	MRTO4	chr1	19246805	19265128
MRTO4_chr1_19246805_19265128	0/0	t0009	1330	4	0	1	3	0	0	copy fasta	MRTO4	chr1	19246805	19265128
MRTO4_chr1_19246805_19265128	0/0	t0010	1330	2	2	0	0	0	0	copy fasta	MRTO4	chr1	19246805	19265128
MRTO4_chr1_19246805_19265128	0/0	t0011	1330	2	0	2	0	0	0	copy fasta	MRTO4	chr1	19246805	19265128
MRTO4_chr1_19246805_19265128	0/0	t0012	1330	1	1	0	0	0	0	copy fasta	MRTO4	chr1	19246805	19265128
MRTO4_chr1_19246805_19265128	0/0	t0013	1330	1	0	1	0	0	0	copy fasta	MRTO4	chr1	19246805	19265128
MRTO4_chr1_19246805_19265128	0/0	t0014	1330	1	0	0	0	0	1	copy fasta	MRTO4	chr1	19246805	19265128
MRTO4_chr1_19246805_19265128	0/0	t0015	1330	1	0	0	0	0	1	copy fasta	MRTO4	chr1	19246805	19265128
MS4A10_chr11_60780333_60806305	0/0	t0001	1498	116	11	11	81	5	8	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/1	t0002	1499	91	6	23	40	5	16	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0003	1495	84	36	17	27	2	2	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0004	1502	32	7	14	5	3	3	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0005	1503	11	0	0	11	0	0	copy fasta	MS4A10	chr11	60780333	60806305