JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MS4A10_chr11_60780333_60806305	0/0	t0006	1499	10	2	2	3	0	3	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0007	1496	8	3	2	0	0	3	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	1/0	t0008	1508	8	6	1	0	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0009	1498	7	0	2	4	0	1	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0010	1495	7	7	0	0	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0011	1500	6	0	1	4	1	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0012	1498	6	0	0	6	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0013	1501	5	4	1	0	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0014	1508	4	4	0	0	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0015	1503	3	3	0	0	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0016	1503	3	0	0	0	0	3	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0017	1497	2	1	0	1	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0018	1502	2	0	1	0	0	1	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0019	1502	2	1	1	0	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0020	1496	2	1	0	1	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0021	1502	2	0	2	0	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0022	1503	2	0	1	0	0	1	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0023	1498	1	0	1	0	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0024	1498	1	0	0	1	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0025	1497	1	0	0	1	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0026	1498	1	1	0	0	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0027	1503	1	1	0	0	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0028	1501	1	0	0	0	1	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0029	1503	1	1	0	0	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0030	1494	1	0	0	1	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0031	1495	1	0	1	0	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0032	1501	1	0	1	0	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0033	1502	1	0	0	0	1	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0034	1502	1	0	0	0	0	1	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0035	1501	1	1	0	0	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0036	1508	1	1	0	0	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0037	1502	1	1	0	0	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0038	1498	1	0	0	1	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0039	1497	1	0	0	1	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0040	1498	1	0	0	1	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A10_chr11_60780333_60806305	0/0	t0041	1498	1	0	0	1	0	0	copy fasta	MS4A10	chr11	60780333	60806305
MS4A12_chr11_60487778_60512430	1/0	t0001	364	259	60	27	134	6	31	copy fasta	MS4A12	chr11	60487778	60512430
MS4A12_chr11_60487778_60512430	0/1	t0002	364	166	30	47	64	10	14	copy fasta	MS4A12	chr11	60487778	60512430
MS4A12_chr11_60487778_60512430	0/0	t0003	364	4	4	0	0	0	0	copy fasta	MS4A12	chr11	60487778	60512430
MS4A12_chr11_60487778_60512430	0/0	t0004	364	2	0	1	0	0	1	copy fasta	MS4A12	chr11	60487778	60512430
MS4A12_chr11_60487778_60512430	0/0	t0005	364	1	0	1	0	0	0	copy fasta	MS4A12	chr11	60487778	60512430
MS4A13_chr11_60510392_60547721	1/1	t0001	491	285	59	41	147	8	28	copy fasta	MS4A13	chr11	60510392	60547721
MS4A13_chr11_60510392_60547721	0/0	t0002	491	107	10	24	53	8	12	copy fasta	MS4A13	chr11	60510392	60547721
MS4A13_chr11_60510392_60547721	0/0	t0003	491	14	7	3	2	0	2	copy fasta	MS4A13	chr11	60510392	60547721
MS4A13_chr11_60510392_60547721	0/0	t0004	491	9	5	4	0	0	0	copy fasta	MS4A13	chr11	60510392	60547721
MS4A13_chr11_60510392_60547721	0/0	t0005	491	4	4	0	0	0	0	copy fasta	MS4A13	chr11	60510392	60547721
MS4A13_chr11_60510392_60547721	0/0	t0006	491	1	0	1	0	0	0	copy fasta	MS4A13	chr11	60510392	60547721
MS4A13_chr11_60510392_60547721	0/0	t0007	491	1	1	0	0	0	0	copy fasta	MS4A13	chr11	60510392	60547721
MS4A13_chr11_60510392_60547721	0/0	t0008	491	1	0	1	0	0	0	copy fasta	MS4A13	chr11	60510392	60547721
MS4A14_chr11_60391459_60422756	0/1	t0001	869	394	70	67	198	12	46	copy fasta	MS4A14	chr11	60391459	60422756