JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MS4A14_chr11_60391459_60422756	0/0	t0002	869	15	14	1	0	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	t0003	869	10	0	4	6	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	t0004	869	5	5	0	0	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	t0005	869	1	1	0	0	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	t0006	869	1	1	0	0	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	1/0	t0007	869	1	0	0	0	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A14_chr11_60391459_60422756	0/0	t0008	869	1	1	0	0	0	0	copy fasta	MS4A14	chr11	60391459	60422756
MS4A15_chr11_60751867_60781733	1/0	t0001	1239	284	35	43	170	10	25	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/1	t0002	1239	70	6	22	20	6	15	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	t0003	1239	29	10	3	10	1	5	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	t0004	1239	16	16	0	0	0	0	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	t0005	1239	15	7	6	0	1	1	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	t0006	1239	7	7	0	0	0	0	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	t0007	1239	5	5	0	0	0	0	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	t0008	1239	5	4	1	0	0	0	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	t0009	1239	3	3	0	0	0	0	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	t0010	1239	3	0	0	3	0	0	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	t0011	1238	3	1	2	0	0	0	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	t0012	1239	2	2	0	0	0	0	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	t0013	1238	1	1	0	0	0	0	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	t0014	1239	1	0	0	1	0	0	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	t0015	1239	1	1	0	0	0	0	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	t0016	1239	1	0	0	1	0	0	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	t0017	1239	1	1	0	0	0	0	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	t0018	1239	1	0	1	0	0	0	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	t0019	1239	1	0	0	1	0	0	copy fasta	MS4A15	chr11	60751867	60781733
MS4A15_chr11_60751867_60781733	0/0	t0020	1239	1	1	0	0	0	0	copy fasta	MS4A15	chr11	60751867	60781733
MS4A18_chr11_60719720_60750028	1/0	t0001	1122	241	48	54	97	13	28	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/1	t0002	1122	79	8	8	55	2	5	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	t0003	1122	38	19	0	18	1	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	t0004	1122	25	0	7	18	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	t0005	1122	7	7	0	0	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	t0006	1122	6	1	1	0	2	2	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	t0007	1122	6	0	0	6	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	t0008	1121	5	5	0	0	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	t0009	1122	2	2	0	0	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	t0010	1122	2	0	0	2	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	t0011	1122	1	1	0	0	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	t0012	1122	1	0	0	1	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	t0013	1121	1	0	0	1	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	t0014	1122	1	1	0	0	0	0	copy fasta	MS4A18	chr11	60719720	60750028
MS4A18_chr11_60719720_60750028	0/0	t0015	1122	1	0	0	0	0	1	copy fasta	MS4A18	chr11	60719720	60750028
MS4A1_chr11_60450847_60475752	1/0	t0001	2663	154	31	23	74	5	20	copy fasta	MS4A1	chr11	60450847	60475752
MS4A1_chr11_60450847_60475752	0/0	t0002	2663	80	7	16	40	7	10	copy fasta	MS4A1	chr11	60450847	60475752
MS4A1_chr11_60450847_60475752	0/0	t0003	2663	49	3	1	40	1	4	copy fasta	MS4A1	chr11	60450847	60475752
MS4A1_chr11_60450847_60475752	0/0	t0004	2663	42	7	1	29	0	5	copy fasta	MS4A1	chr11	60450847	60475752
MS4A1_chr11_60450847_60475752	0/0	t0005	2663	24	18	3	0	2	1	copy fasta	MS4A1	chr11	60450847	60475752
MS4A1_chr11_60450847_60475752	0/1	t0006	2663	17	9	4	0	2	1	copy fasta	MS4A1	chr11	60450847	60475752
MS4A1_chr11_60450847_60475752	0/0	t0007	2663	16	12	4	0	0	0	copy fasta	MS4A1	chr11	60450847	60475752
MS4A1_chr11_60450847_60475752	0/0	t0008	2574	12	0	5	7	0	0	copy fasta	MS4A1	chr11	60450847	60475752