JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MS4A1_chr11_60450847_60475752	0/0	t0009	2664	10	0	9	0	1	0	copy fasta	MS4A1	chr11	60450847	60475752
MS4A1_chr11_60450847_60475752	0/0	t0010	2663	8	0	0	8	0	0	copy fasta	MS4A1	chr11	60450847	60475752
MS4A1_chr11_60450847_60475752	0/0	t0011	2663	6	0	0	6	0	0	copy fasta	MS4A1	chr11	60450847	60475752
MS4A1_chr11_60450847_60475752	0/0	t0012	2663	6	0	3	3	0	0	copy fasta	MS4A1	chr11	60450847	60475752
MS4A1_chr11_60450847_60475752	0/0	t0013	2663	5	0	0	5	0	0	copy fasta	MS4A1	chr11	60450847	60475752
MS4A1_chr11_60450847_60475752	0/0	t0014	2663	4	3	1	0	0	0	copy fasta	MS4A1	chr11	60450847	60475752
MS4A1_chr11_60450847_60475752	0/0	t0015	2663	2	0	0	2	0	0	copy fasta	MS4A1	chr11	60450847	60475752
MS4A1_chr11_60450847_60475752	0/0	t0016	2663	2	0	0	2	0	0	copy fasta	MS4A1	chr11	60450847	60475752
MS4A1_chr11_60450847_60475752	0/0	t0017	2663	1	0	0	1	0	0	copy fasta	MS4A1	chr11	60450847	60475752
MS4A1_chr11_60450847_60475752	0/0	t0018	2664	1	1	0	0	0	0	copy fasta	MS4A1	chr11	60450847	60475752
MS4A1_chr11_60450847_60475752	0/0	t0019	2663	1	1	0	0	0	0	copy fasta	MS4A1	chr11	60450847	60475752
MS4A1_chr11_60450847_60475752	0/0	t0020	2663	1	1	0	0	0	0	copy fasta	MS4A1	chr11	60450847	60475752
MS4A1_chr11_60450847_60475752	0/0	t0021	2663	1	1	0	0	0	0	copy fasta	MS4A1	chr11	60450847	60475752
MS4A1_chr11_60450847_60475752	0/0	t0022	2663	1	0	0	1	0	0	copy fasta	MS4A1	chr11	60450847	60475752
MS4A1_chr11_60450847_60475752	0/0	t0023	2663	1	0	0	1	0	0	copy fasta	MS4A1	chr11	60450847	60475752
MS4A1_chr11_60450847_60475752	0/0	t0024	2664	1	0	0	1	0	0	copy fasta	MS4A1	chr11	60450847	60475752
MS4A1_chr11_60450847_60475752	0/0	t0025	2664	1	0	0	0	0	1	copy fasta	MS4A1	chr11	60450847	60475752
MS4A2_chr11_60083664_60103467	1/1	t0001	2914	101	2	28	61	1	7	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0002	2912	68	2	25	14	9	18	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0003	2914	65	31	4	19	3	8	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0004	2913	44	8	1	35	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0005	2914	29	9	2	11	0	7	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0006	2912	24	3	0	19	0	2	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0007	2913	10	7	2	1	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0008	2915	9	0	1	7	0	1	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0009	2915	5	4	0	1	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0010	2912	4	1	2	0	1	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0011	2913	4	0	2	2	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0012	2914	4	3	1	0	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0013	2913	4	4	0	0	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0014	2914	4	1	0	3	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0015	2913	3	3	0	0	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0016	2913	3	3	0	0	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0017	2915	3	0	1	2	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0018	2913	2	0	0	2	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0019	2915	2	0	0	0	0	2	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0020	2884	1	0	0	1	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0021	2914	1	1	0	0	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0022	2912	1	0	0	0	0	1	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0023	2914	1	0	0	1	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0024	2913	1	0	0	1	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0025	2912	1	0	0	0	1	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0026	2912	1	0	0	1	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0027	2912	1	0	0	1	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0028	2913	1	1	0	0	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0029	2912	1	1	0	0	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0030	2914	1	1	0	0	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0031	2914	1	1	0	0	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0032	2914	1	0	0	1	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0033	2914	1	1	0	0	0	0	copy fasta	MS4A2	chr11	60083664	60103467