JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MS4A2_chr11_60083664_60103467	0/0	t0034	2914	1	1	0	0	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0035	2913	1	1	0	0	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0036	2914	1	0	1	0	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0037	2914	1	0	0	1	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0038	2915	1	1	0	0	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0039	2915	1	1	0	0	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0040	2914	1	1	0	0	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0041	2913	1	0	0	0	1	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0042	2914	1	1	0	0	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0043	2915	1	1	0	0	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0044	2915	1	0	0	1	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0045	2914	1	1	0	0	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0046	2914	1	0	0	1	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0047	2914	1	0	0	1	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0048	2913	1	0	0	1	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A2_chr11_60083664_60103467	0/0	t0049	2913	1	1	0	0	0	0	copy fasta	MS4A2	chr11	60083664	60103467
MS4A3_chr11_60051665_60076115	1/1	t0001	974	293	57	58	147	6	23	copy fasta	MS4A3	chr11	60051665	60076115
MS4A3_chr11_60051665_60076115	0/0	t0002	982	105	29	14	35	10	17	copy fasta	MS4A3	chr11	60051665	60076115
MS4A3_chr11_60051665_60076115	0/0	t0003	974	4	4	0	0	0	0	copy fasta	MS4A3	chr11	60051665	60076115
MS4A3_chr11_60051665_60076115	0/0	t0004	974	1	0	0	1	0	0	copy fasta	MS4A3	chr11	60051665	60076115
MS4A3_chr11_60051665_60076115	0/0	t0005	974	1	1	0	0	0	0	copy fasta	MS4A3	chr11	60051665	60076115
MS4A3_chr11_60051665_60076115	0/0	t0006	974	1	0	0	1	0	0	copy fasta	MS4A3	chr11	60051665	60076115
MS4A3_chr11_60051665_60076115	0/0	t0007	974	1	1	0	0	0	0	copy fasta	MS4A3	chr11	60051665	60076115
MS4A3_chr11_60051665_60076115	0/0	t0008	982	1	0	0	1	0	0	copy fasta	MS4A3	chr11	60051665	60076115
MS4A3_chr11_60051665_60076115	0/0	t0009	974	1	0	0	1	0	0	copy fasta	MS4A3	chr11	60051665	60076115
MS4A4A_chr11_60275666_60313970	0/1	t0001	803	264	53	56	122	6	26	copy fasta	MS4A4A	chr11	60275666	60313970
MS4A4A_chr11_60275666_60313970	0/0	t0002	803	87	21	13	33	6	14	copy fasta	MS4A4A	chr11	60275666	60313970
MS4A4A_chr11_60275666_60313970	1/0	t0003	803	48	12	1	33	0	1	copy fasta	MS4A4A	chr11	60275666	60313970
MS4A4A_chr11_60275666_60313970	0/0	t0004	803	19	0	0	19	0	0	copy fasta	MS4A4A	chr11	60275666	60313970
MS4A4A_chr11_60275666_60313970	0/0	t0005	800	4	4	0	0	0	0	copy fasta	MS4A4A	chr11	60275666	60313970
MS4A4A_chr11_60275666_60313970	0/0	t0006	803	2	2	0	0	0	0	copy fasta	MS4A4A	chr11	60275666	60313970
MS4A4A_chr11_60275666_60313970	0/0	t0007	803	1	0	0	0	0	1	copy fasta	MS4A4A	chr11	60275666	60313970
MS4A4A_chr11_60275666_60313970	0/0	t0008	803	1	0	0	1	0	0	copy fasta	MS4A4A	chr11	60275666	60313970
MS4A4A_chr11_60275666_60313970	0/0	t0009	803	1	1	0	0	0	0	copy fasta	MS4A4A	chr11	60275666	60313970
MS4A4A_chr11_60275666_60313970	0/0	t0010	803	1	1	0	0	0	0	copy fasta	MS4A4A	chr11	60275666	60313970
MS4A4A_chr11_60275666_60313970	0/0	t0011	803	1	1	0	0	0	0	copy fasta	MS4A4A	chr11	60275666	60313970
MS4A4A_chr11_60275666_60313970	0/0	t0012	803	1	1	0	0	0	0	copy fasta	MS4A4A	chr11	60275666	60313970
MS4A4E_chr11_60195270_60248137	0/0	t0001	1471	200	35	33	115	5	12	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	1/0	t0002	1470	57	20	2	33	0	1	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0003	1470	42	1	15	8	2	16	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0004	1470	19	3	2	13	0	1	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0005	1471	7	0	7	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0006	1470	7	7	0	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0007	1470	6	0	0	6	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0008	1471	5	0	1	0	0	4	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0009	1470	5	0	0	5	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0010	1470	5	0	0	5	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0011	1250	4	4	0	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0012	1474	4	4	0	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0013	1474	4	0	2	0	2	0	copy fasta	MS4A4E	chr11	60195270	60248137