JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MS4A4E_chr11_60195270_60248137	0/0	t0014	1470	4	4	0	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0015	1471	3	0	2	1	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0016	1511	2	0	0	0	0	2	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0017	1471	2	2	0	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0018	1470	2	0	0	0	1	1	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0019	1470	2	0	2	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0020	1470	2	0	0	2	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0021	1510	1	0	0	0	0	1	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0022	1474	1	1	0	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0023	1421	1	1	0	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0024	1422	1	0	0	1	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0025	1422	1	0	0	0	1	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0026	1471	1	0	0	1	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0027	1471	1	0	0	1	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0028	1471	1	0	1	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/1	t0029	1471	1	0	0	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0030	1471	1	1	0	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0031	1471	1	0	0	1	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0032	1471	1	1	0	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0033	1422	1	0	0	1	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0034	1471	1	0	0	0	1	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0035	1471	1	1	0	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0036	1471	1	0	0	1	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0037	1474	1	1	0	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0038	1471	1	0	1	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0039	1470	1	0	0	0	1	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0040	1470	1	0	0	1	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0041	1470	1	0	0	1	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0042	1470	1	0	0	0	1	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0043	1470	1	1	0	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0044	1470	1	1	0	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0045	1470	1	1	0	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0046	1422	1	1	0	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0047	1470	1	0	1	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A4E_chr11_60195270_60248137	0/0	t0048	1470	1	0	1	0	0	0	copy fasta	MS4A4E	chr11	60195270	60248137
MS4A5_chr11_60424572_60452792	1/1	t0001	137	462	98	74	224	18	46	copy fasta	MS4A5	chr11	60424572	60452792
MS4A6A_chr11_60167497_60188083	0/1	t0001	625	356	81	58	162	12	42	copy fasta	MS4A6A	chr11	60167497	60188083
MS4A6A_chr11_60167497_60188083	1/0	t0002	625	5	4	0	0	0	0	copy fasta	MS4A6A	chr11	60167497	60188083
MS4A6A_chr11_60167497_60188083	0/0	t0003	625	3	1	2	0	0	0	copy fasta	MS4A6A	chr11	60167497	60188083
MS4A6A_chr11_60167497_60188083	0/0	t0004	625	1	1	0	0	0	0	copy fasta	MS4A6A	chr11	60167497	60188083
MS4A6A_chr11_60167497_60188083	0/0	t0005	625	1	1	0	0	0	0	copy fasta	MS4A6A	chr11	60167497	60188083
MS4A6E_chr11_60322255_60346341	1/0	t0001	744	171	32	23	79	10	26	copy fasta	MS4A6E	chr11	60322255	60346341
MS4A6E_chr11_60322255_60346341	0/1	t0002	744	113	12	28	61	2	9	copy fasta	MS4A6E	chr11	60322255	60346341
MS4A6E_chr11_60322255_60346341	0/0	t0003	744	74	10	10	40	5	9	copy fasta	MS4A6E	chr11	60322255	60346341
MS4A6E_chr11_60322255_60346341	0/0	t0004	744	33	17	4	10	1	1	copy fasta	MS4A6E	chr11	60322255	60346341
MS4A6E_chr11_60322255_60346341	0/0	t0005	744	24	5	7	11	0	1	copy fasta	MS4A6E	chr11	60322255	60346341
MS4A6E_chr11_60322255_60346341	0/0	t0006	744	14	5	1	8	0	0	copy fasta	MS4A6E	chr11	60322255	60346341
MS4A6E_chr11_60322255_60346341	0/0	t0007	744	9	9	0	0	0	0	copy fasta	MS4A6E	chr11	60322255	60346341
MS4A6E_chr11_60322255_60346341	0/0	t0008	744	2	2	0	0	0	0	copy fasta	MS4A6E	chr11	60322255	60346341
MS4A6E_chr11_60322255_60346341	0/0	t0009	744	2	0	2	0	0	0	copy fasta	MS4A6E	chr11	60322255	60346341