JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MS4A6E_chr11_60322255_60346341	0/0	t0010	743	2	2	0	0	0	0	copy fasta	MS4A6E	chr11	60322255	60346341
MS4A6E_chr11_60322255_60346341	0/0	t0011	744	2	2	0	0	0	0	copy fasta	MS4A6E	chr11	60322255	60346341
MS4A6E_chr11_60322255_60346341	0/0	t0012	744	1	0	1	0	0	0	copy fasta	MS4A6E	chr11	60322255	60346341
MS4A6E_chr11_60322255_60346341	0/0	t0013	744	1	1	0	0	0	0	copy fasta	MS4A6E	chr11	60322255	60346341
MS4A6E_chr11_60322255_60346341	0/0	t0014	743	1	1	0	0	0	0	copy fasta	MS4A6E	chr11	60322255	60346341
MS4A6E_chr11_60322255_60346341	0/0	t0015	744	1	0	0	1	0	0	copy fasta	MS4A6E	chr11	60322255	60346341
MS4A7_chr11_60373532_60400948	0/1	t0001	2235	187	43	27	93	4	19	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	1/0	t0002	2234	83	10	13	44	5	10	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	0/0	t0003	2235	75	4	20	35	5	11	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	0/0	t0004	2234	15	0	0	15	0	0	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	0/0	t0005	2235	12	0	4	8	0	0	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	0/0	t0006	2235	8	8	0	0	0	0	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	0/0	t0007	2234	6	6	0	0	0	0	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	0/0	t0008	2236	5	5	0	0	0	0	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	0/0	t0009	2234	5	5	0	0	0	0	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	0/0	t0010	2235	4	4	0	0	0	0	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	0/0	t0011	2235	4	0	0	4	0	0	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	0/0	t0012	2234	3	0	2	0	0	1	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	0/0	t0013	2235	2	2	0	0	0	0	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	0/0	t0014	2235	1	0	0	0	0	1	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	0/0	t0015	2236	1	1	0	0	0	0	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	0/0	t0016	2235	1	1	0	0	0	0	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	0/0	t0017	2235	1	1	0	0	0	0	copy fasta	MS4A7	chr11	60373532	60400948
MS4A7_chr11_60373532_60400948	0/0	t0018	2235	1	0	0	1	0	0	copy fasta	MS4A7	chr11	60373532	60400948
MS4A8_chr11_60694612_60720807	1/1	t0001	558	353	64	58	173	14	42	copy fasta	MS4A8	chr11	60694612	60720807
MS4A8_chr11_60694612_60720807	0/0	t0002	558	26	4	9	13	0	0	copy fasta	MS4A8	chr11	60694612	60720807
MS4A8_chr11_60694612_60720807	0/0	t0003	558	16	15	1	0	0	0	copy fasta	MS4A8	chr11	60694612	60720807
MS4A8_chr11_60694612_60720807	0/0	t0004	558	2	2	0	0	0	0	copy fasta	MS4A8	chr11	60694612	60720807
MS4A8_chr11_60694612_60720807	0/0	t0005	558	2	2	0	0	0	0	copy fasta	MS4A8	chr11	60694612	60720807
MS4A8_chr11_60694612_60720807	0/0	t0006	558	1	1	0	0	0	0	copy fasta	MS4A8	chr11	60694612	60720807
MS4A8_chr11_60694612_60720807	0/0	t0007	558	1	0	0	1	0	0	copy fasta	MS4A8	chr11	60694612	60720807
MS4A8_chr11_60694612_60720807	0/0	t0008	558	1	0	0	1	0	0	copy fasta	MS4A8	chr11	60694612	60720807
MSANTD1_chr4_3244159_3261613	1/1	t0001	713	248	47	47	122	9	21	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	t0002	713	143	28	26	68	7	14	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	t0003	713	14	8	1	0	1	4	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	t0004	713	6	5	1	0	0	0	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	t0005	713	5	4	1	0	0	0	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	t0006	713	4	0	4	0	0	0	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	t0007	714	3	0	1	2	0	0	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	t0008	713	2	2	0	0	0	0	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	t0009	713	2	2	0	0	0	0	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	t0010	713	1	0	0	0	0	1	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	t0011	713	1	0	0	0	0	1	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	t0012	713	1	0	0	1	0	0	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	t0013	713	1	0	1	0	0	0	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	t0014	713	1	0	0	1	0	0	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	t0015	714	1	0	0	0	0	1	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD1_chr4_3244159_3261613	0/0	t0016	713	1	0	0	0	1	0	copy fasta	MSANTD1	chr4	3244159	3261613
MSANTD2_chr11_124761498_124805406	1/1	t0001	705	104	4	30	46	5	17	copy fasta	MSANTD2	chr11	124761498	124805406
MSANTD2_chr11_124761498_124805406	0/0	t0002	707	87	38	7	34	2	6	copy fasta	MSANTD2	chr11	124761498	124805406