JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MSANTD4_chr11_106002899_106027240	0/0	t0027	3066	1	0	0	1	0	0	copy fasta	MSANTD4	chr11	106002899	106027240
MSANTD4_chr11_106002899_106027240	0/0	t0028	3066	1	1	0	0	0	0	copy fasta	MSANTD4	chr11	106002899	106027240
MSANTD4_chr11_106002899_106027240	0/0	t0029	3066	1	1	0	0	0	0	copy fasta	MSANTD4	chr11	106002899	106027240
MSANTD4_chr11_106002899_106027240	0/0	t0030	3066	1	0	1	0	0	0	copy fasta	MSANTD4	chr11	106002899	106027240
MSANTD5_chr5_178689572_178702761	0/0	t0001	308	264	82	59	88	10	25	copy fasta	MSANTD5	chr5	178689572	178702761
MSANTD5_chr5_178689572_178702761	0/0	t0002	308	107	8	15	64	4	16	copy fasta	MSANTD5	chr5	178689572	178702761
MSANTD5_chr5_178689572_178702761	1/1	t0003	308	54	4	3	37	2	6	copy fasta	MSANTD5	chr5	178689572	178702761
MSANTD5_chr5_178689572_178702761	0/0	t0004	306	3	0	0	3	0	0	copy fasta	MSANTD5	chr5	178689572	178702761
MSANTD5_chr5_178689572_178702761	0/0	t0005	308	1	0	1	0	0	0	copy fasta	MSANTD5	chr5	178689572	178702761
MSANTD5_chr5_178689572_178702761	0/0	t0006	308	1	0	0	0	0	1	copy fasta	MSANTD5	chr5	178689572	178702761
MSANTD7_chr10_14833306_14851999	1/1	t0001	3575	195	33	41	84	12	23	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0002	3564	86	13	5	59	0	9	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0003	3564	16	1	9	0	1	5	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0004	3575	16	0	0	14	0	2	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0005	3564	13	13	0	0	0	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0006	3576	12	7	3	1	1	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0007	3575	11	0	0	9	0	2	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0008	3564	8	0	0	8	0	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0009	3570	8	8	0	0	0	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0010	3566	6	6	0	0	0	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0011	3575	5	1	3	0	1	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0012	3576	4	4	0	0	0	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0013	3576	3	1	2	0	0	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0014	3575	2	0	0	2	0	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0015	3575	2	0	0	2	0	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0016	3575	2	0	0	2	0	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0017	3542	1	0	0	1	0	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0018	3564	1	0	0	1	0	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0019	3564	1	1	0	0	0	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0020	3576	1	1	0	0	0	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0021	3575	1	1	0	0	0	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0022	3575	1	0	1	0	0	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0023	3575	1	0	0	0	0	1	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0024	3575	1	0	0	1	0	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0025	3575	1	0	0	1	0	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0026	3575	1	0	0	1	0	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0027	3575	1	1	0	0	0	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0028	3575	1	1	0	0	0	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0029	3566	1	1	0	0	0	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0030	3571	1	1	0	0	0	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	t0031	3575	1	0	0	0	1	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSC_chr8_71836560_71849412	1/1	t0001	1336	188	18	40	94	6	28	copy fasta	MSC	chr8	71836560	71849412
MSC_chr8_71836560_71849412	0/0	t0002	1336	107	8	13	67	8	11	copy fasta	MSC	chr8	71836560	71849412
MSC_chr8_71836560_71849412	0/0	t0003	1336	74	41	13	15	2	3	copy fasta	MSC	chr8	71836560	71849412
MSC_chr8_71836560_71849412	0/0	t0004	1336	57	4	2	44	1	6	copy fasta	MSC	chr8	71836560	71849412
MSC_chr8_71836560_71849412	0/0	t0005	1336	12	12	0	0	0	0	copy fasta	MSC	chr8	71836560	71849412
MSC_chr8_71836560_71849412	0/0	t0006	1333	8	6	2	0	0	0	copy fasta	MSC	chr8	71836560	71849412
MSC_chr8_71836560_71849412	0/0	t0007	1336	5	0	0	5	0	0	copy fasta	MSC	chr8	71836560	71849412
MSC_chr8_71836560_71849412	0/0	t0008	1336	4	4	0	0	0	0	copy fasta	MSC	chr8	71836560	71849412
MSC_chr8_71836560_71849412	0/0	t0009	1336	2	0	1	0	1	0	copy fasta	MSC	chr8	71836560	71849412