Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARHGEF38_chr4_105547620_105685914	0/0	t0006	3124	5	5	0	0	0	0	copy fasta	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	t0007	3119	4	3	0	0	1	0	copy fasta	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	t0008	3124	4	4	0	0	0	0	copy fasta	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	t0009	3116	4	2	2	0	0	0	copy fasta	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	t0010	3121	2	1	1	0	0	0	copy fasta	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	t0011	3124	2	2	0	0	0	0	copy fasta	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	t0012	3122	2	2	0	0	0	0	copy fasta	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	t0013	3123	2	2	0	0	0	0	copy fasta	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	t0014	3123	1	1	0	0	0	0	copy fasta	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	t0015	3119	1	1	0	0	0	0	copy fasta	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	t0016	3124	1	0	1	0	0	0	copy fasta	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	t0017	3124	1	0	0	0	0	1	copy fasta	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	t0018	3124	1	0	0	0	1	0	copy fasta	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	t0019	3124	1	0	0	0	0	1	copy fasta	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	t0020	3117	1	1	0	0	0	0	copy fasta	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	t0021	3124	1	1	0	0	0	0	copy fasta	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	t0022	3119	1	1	0	0	0	0	copy fasta	ARHGEF38	chr4	105547620	105685914
ARHGEF39_chr9_35654343_35670195	0/0	t0001	2671	78	1	9	63	0	5	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	t0002	2671	76	5	4	57	1	9	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	t0003	2671	63	3	16	30	5	9	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	1/0	t0004	2671	58	36	10	2	2	7	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/1	t0005	2671	57	5	25	8	5	13	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	t0006	2671	21	13	2	4	0	2	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	t0007	2671	15	1	4	7	1	2	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	t0008	2671	15	14	1	0	0	0	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	t0009	2671	12	11	1	0	0	0	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	t0010	2671	9	0	0	9	0	0	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	t0011	2671	6	0	0	6	0	0	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	t0012	2671	2	0	0	0	2	0	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	t0013	2671	1	1	0	0	0	0	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	t0014	2671	1	0	0	1	0	0	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	t0015	2671	1	1	0	0	0	0	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	t0016	2671	1	0	0	1	0	0	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	t0017	2671	1	0	0	1	0	0	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	t0018	2671	1	0	1	0	0	0	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	t0019	2671	1	0	1	0	0	0	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	t0020	2671	1	0	0	1	0	0	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	t0021	2671	1	0	0	0	0	1	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	t0022	2671	1	1	0	0	0	0	copy fasta	ARHGEF39	chr9	35654343	35670195
ARHGEF3_chr3_56722420_56806949	1/0	t0001	2002	169	51	34	61	12	10	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	t0002	2002	97	12	7	56	1	21	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/1	t0003	2002	59	6	7	34	3	8	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	t0004	2002	14	0	5	7	0	2	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	t0005	1998	3	3	0	0	0	0	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	t0006	2002	2	2	0	0	0	0	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	t0007	2002	2	2	0	0	0	0	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	t0008	1998	2	2	0	0	0	0	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	t0009	2002	1	1	0	0	0	0	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	t0010	2002	1	1	0	0	0	0	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	t0011	2002	1	0	0	1	0	0	copy fasta	ARHGEF3	chr3	56722420	56806949