JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MSH3_chr5_80649652_80881815	0/1	t0025	1023	1	0	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	t0026	1030	1	0	0	0	0	1	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	t0027	1030	1	1	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	t0028	1023	1	0	1	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	t0029	1030	1	0	0	0	0	1	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	t0030	1030	1	1	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	t0031	1030	1	0	1	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH4_chr1_75791882_75918242	1/1	t0001	460	312	80	66	112	14	38	copy fasta	MSH4	chr1	75791882	75918242
MSH4_chr1_75791882_75918242	0/0	t0002	460	7	0	7	0	0	0	copy fasta	MSH4	chr1	75791882	75918242
MSH4_chr1_75791882_75918242	0/0	t0003	460	7	6	1	0	0	0	copy fasta	MSH4	chr1	75791882	75918242
MSH4_chr1_75791882_75918242	0/0	t0004	460	3	3	0	0	0	0	copy fasta	MSH4	chr1	75791882	75918242
MSH4_chr1_75791882_75918242	0/0	t0005	460	1	0	0	1	0	0	copy fasta	MSH4	chr1	75791882	75918242
MSH4_chr1_75791882_75918242	0/0	t0006	473	1	0	0	1	0	0	copy fasta	MSH4	chr1	75791882	75918242
MSH4_chr1_75791882_75918242	0/0	t0007	460	1	1	0	0	0	0	copy fasta	MSH4	chr1	75791882	75918242
MSH5_chr6_31735005_31767676	0/1	t0001	217	393	88	76	166	18	44	copy fasta	MSH5	chr6	31735005	31767676
MSH5_chr6_31735005_31767676	0/0	t0002	217	3	3	0	0	0	0	copy fasta	MSH5	chr6	31735005	31767676
MSH5_chr6_31735005_31767676	0/0	t0003	217	1	1	0	0	0	0	copy fasta	MSH5	chr6	31735005	31767676
MSH6_chr2_47778145_47811953	1/1	t0001	183	388	85	78	167	16	40	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	t0002	183	1	0	0	1	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSH6_chr2_47778145_47811953	0/0	t0003	183	1	1	0	0	0	0	copy fasta	MSH6	chr2	47778145	47811953
MSI1_chr12_120336330_120374164	1/1	t0001	1871	112	25	8	55	10	12	copy fasta	MSI1	chr12	120336330	120374164
MSI1_chr12_120336330_120374164	0/0	t0002	1870	86	42	15	20	2	7	copy fasta	MSI1	chr12	120336330	120374164
MSI1_chr12_120336330_120374164	0/0	t0003	1870	85	6	18	44	3	14	copy fasta	MSI1	chr12	120336330	120374164
MSI1_chr12_120336330_120374164	0/0	t0004	1869	20	8	3	5	0	4	copy fasta	MSI1	chr12	120336330	120374164
MSI1_chr12_120336330_120374164	0/0	t0005	1872	9	4	1	2	0	2	copy fasta	MSI1	chr12	120336330	120374164
MSI1_chr12_120336330_120374164	0/0	t0006	1869	7	4	0	2	1	0	copy fasta	MSI1	chr12	120336330	120374164
MSI1_chr12_120336330_120374164	0/0	t0007	1871	6	0	6	0	0	0	copy fasta	MSI1	chr12	120336330	120374164
MSI1_chr12_120336330_120374164	0/0	t0008	1873	4	2	2	0	0	0	copy fasta	MSI1	chr12	120336330	120374164
MSI1_chr12_120336330_120374164	0/0	t0009	1871	4	0	0	3	0	1	copy fasta	MSI1	chr12	120336330	120374164
MSI1_chr12_120336330_120374164	0/0	t0010	1871	2	0	2	0	0	0	copy fasta	MSI1	chr12	120336330	120374164
MSI1_chr12_120336330_120374164	0/0	t0011	1872	2	0	0	2	0	0	copy fasta	MSI1	chr12	120336330	120374164
MSI1_chr12_120336330_120374164	0/0	t0012	1871	1	0	1	0	0	0	copy fasta	MSI1	chr12	120336330	120374164
MSI1_chr12_120336330_120374164	0/0	t0013	1872	1	1	0	0	0	0	copy fasta	MSI1	chr12	120336330	120374164
MSI1_chr12_120336330_120374164	0/0	t0014	1870	1	0	0	1	0	0	copy fasta	MSI1	chr12	120336330	120374164
MSI1_chr12_120336330_120374164	0/0	t0015	1870	1	0	0	1	0	0	copy fasta	MSI1	chr12	120336330	120374164
MSI1_chr12_120336330_120374164	0/0	t0016	1871	1	1	0	0	0	0	copy fasta	MSI1	chr12	120336330	120374164
MSI1_chr12_120336330_120374164	0/0	t0017	1871	1	0	1	0	0	0	copy fasta	MSI1	chr12	120336330	120374164
MSI1_chr12_120336330_120374164	0/0	t0018	1871	1	0	0	1	0	0	copy fasta	MSI1	chr12	120336330	120374164
MSI1_chr12_120336330_120374164	0/0	t0019	1872	1	0	0	1	0	0	copy fasta	MSI1	chr12	120336330	120374164
MSI1_chr12_120336330_120374164	0/0	t0020	1871	1	0	0	1	0	0	copy fasta	MSI1	chr12	120336330	120374164
MSI1_chr12_120336330_120374164	0/0	t0021	1870	1	0	1	0	0	0	copy fasta	MSI1	chr12	120336330	120374164
MSI1_chr12_120336330_120374164	0/0	t0022	1871	1	1	0	0	0	0	copy fasta	MSI1	chr12	120336330	120374164
MSI2_chr17_57251523_57689689	0/0	t0001	5395	11	3	1	5	1	1	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0002	5394	8	0	2	4	0	2	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0003	5394	7	1	2	3	0	1	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	1/0	t0004	5393	5	0	4	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0005	5393	5	2	0	1	0	2	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0006	5394	5	3	2	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0007	5395	4	2	1	0	1	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0008	5395	4	3	1	0	0	0	copy fasta	MSI2	chr17	57251523	57689689