JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
MSI2_chr17_57251523_57689689	0/0	t0009	5390	4	3	1	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0010	5394	3	0	0	3	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0011	5394	3	1	0	1	1	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0012	5395	3	3	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0013	5388	3	2	1	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0014	5394	2	1	1	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0015	5396	2	0	1	1	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0016	5395	2	0	0	2	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0017	5389	2	0	2	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0018	5394	2	0	0	1	1	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0019	5395	2	2	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/1	t0020	5395	2	0	1	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0021	5394	2	2	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0022	5394	2	1	0	1	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0023	5395	2	0	1	1	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0024	5396	2	0	1	1	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0025	5396	2	2	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0026	5394	2	2	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0027	5395	1	1	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0028	5396	1	1	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0029	5394	1	1	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0030	5395	1	0	0	1	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0031	5395	1	0	0	1	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0032	5394	1	0	0	1	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0033	5395	1	0	0	1	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0034	5395	1	0	0	1	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0035	5396	1	0	0	1	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0036	5398	1	0	1	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0037	5395	1	0	0	0	1	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0038	5394	1	0	0	0	1	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0039	5394	1	1	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0040	5397	1	0	1	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0041	5397	1	0	1	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0042	5395	1	0	0	1	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0043	5396	1	0	0	0	1	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0044	5397	1	0	0	1	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0045	5394	1	1	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0046	5393	1	1	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0047	5393	1	1	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0048	5393	1	1	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0049	5395	1	1	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0050	5393	1	1	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0051	5394	1	0	0	1	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0052	5395	1	1	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0053	5395	1	1	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0054	5394	1	1	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0055	5395	1	1	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0056	5395	1	1	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0057	5389	1	1	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0058	5394	1	0	0	1	0	copy fasta	MSI2	chr17	57251523	57689689