JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MSI2_chr17_57251523_57689689	0/0	t0059	5396	1	1	0	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0060	5395	1	0	1	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0061	5394	1	0	0	1	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0062	5394	1	1	0	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0063	5394	1	1	0	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0064	5397	1	1	0	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0065	5395	1	0	0	0	0	1	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0066	5396	1	0	0	1	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0067	5394	1	1	0	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0068	5394	1	1	0	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0069	5394	1	1	0	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0070	5396	1	1	0	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0071	5389	1	1	0	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0072	5388	1	1	0	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0073	5389	1	0	1	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0074	5389	1	1	0	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0075	5395	1	0	0	0	1	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0076	5395	1	0	0	1	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0077	5394	1	0	0	0	0	1	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0078	5395	1	0	0	1	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0079	5395	1	1	0	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0080	5395	1	0	1	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0081	5395	1	1	0	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0082	5396	1	1	0	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0083	5396	1	1	0	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0084	5395	1	0	0	1	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0085	5395	1	1	0	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0086	5394	1	0	1	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0087	5397	1	1	0	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0088	5394	1	1	0	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0089	5395	1	0	1	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0090	5396	1	0	0	1	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0091	5394	1	0	0	0	0	1	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0092	5396	1	1	0	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0093	5397	1	1	0	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0094	5396	1	0	0	0	1	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0095	5397	1	0	1	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0096	5396	1	1	0	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0097	5391	1	1	0	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0098	5396	1	1	0	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0099	5397	1	0	0	1	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0100	5397	1	1	0	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0101	5397	1	0	1	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0102	5395	1	1	0	0	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSI2_chr17_57251523_57689689	0/0	t0103	5394	1	0	0	1	0	0	copy fasta	MSI2	chr17	57251523	57689689
MSL1_chr17_40116971_40141917	1/1	t0001	3191	267	50	47	139	12	17	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	t0002	3191	14	0	0	14	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	t0003	3187	12	11	1	0	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	t0004	3192	12	0	5	6	0	1	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	t0005	3193	8	0	4	3	0	1	copy fasta	MSL1	chr17	40116971	40141917