JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MSL1_chr17_40116971_40141917	0/0	t0006	3191	6	5	1	0	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	t0007	3191	5	0	4	0	1	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	t0008	3187	4	4	0	0	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	t0009	3187	3	3	0	0	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	t0010	3187	3	3	0	0	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	t0011	3187	2	1	1	0	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	t0012	3191	2	2	0	0	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	t0013	3187	2	0	1	0	1	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	t0014	3192	1	1	0	0	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	t0015	3187	1	1	0	0	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	t0016	3193	1	1	0	0	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	t0017	3187	1	1	0	0	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	t0018	3191	1	1	0	0	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	t0019	3192	1	0	0	1	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	t0020	3191	1	1	0	0	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	t0021	3191	1	0	0	1	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	t0022	3191	1	0	0	0	0	1	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	t0023	3191	1	0	0	0	0	1	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	t0024	3203	1	0	0	1	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	t0025	3191	1	1	0	0	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	t0026	3191	1	0	0	1	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	t0027	3191	1	0	0	1	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	t0028	3191	1	0	0	1	0	0	copy fasta	MSL1	chr17	40116971	40141917
MSL1_chr17_40116971_40141917	0/0	t0029	3191	1	0	0	0	0	1	copy fasta	MSL1	chr17	40116971	40141917
MSL2_chr3_136143917_136201335	0/0	t0001	3453	119	55	19	24	5	16	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/1	t0002	3453	87	5	22	40	6	13	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	t0003	3449	13	0	5	0	1	7	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	t0004	3449	13	0	5	0	1	7	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	t0005	3453	12	0	3	9	0	0	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	t0006	3450	10	0	0	10	0	0	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	t0007	3454	10	9	1	0	0	0	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	t0008	3452	7	5	2	0	0	0	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	t0009	3454	7	6	1	0	0	0	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	t0010	3451	3	3	0	0	0	0	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	t0011	3453	3	0	3	0	0	0	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	t0012	3450	2	0	0	2	0	0	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	t0013	3448	2	0	2	0	0	0	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	t0014	3453	2	0	0	0	1	1	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	t0015	3453	2	2	0	0	0	0	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	t0016	3454	2	0	0	2	0	0	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	t0017	3453	1	1	0	0	0	0	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	t0018	3453	1	1	0	0	0	0	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	t0019	3454	1	1	0	0	0	0	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	t0020	3453	1	1	0	0	0	0	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	t0021	3448	1	1	0	0	0	0	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	t0022	3453	1	1	0	0	0	0	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	t0023	3453	1	1	0	0	0	0	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	t0024	3453	1	0	0	1	0	0	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	t0025	3450	1	0	0	1	0	0	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	t0026	3453	1	0	0	1	0	0	copy fasta	MSL2	chr3	136143917	136201335