JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MSL2_chr3_136143917_136201335	0/0	t0027	3453	1	0	1	0	0	0	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	t0028	3453	1	0	1	0	0	0	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	t0029	3453	1	0	1	0	0	0	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	t0030	3453	1	0	0	1	0	0	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	1/0	t0031	3453	1	0	0	0	0	0	copy fasta	MSL2	chr3	136143917	136201335
MSL2_chr3_136143917_136201335	0/0	t0032	3453	1	0	0	1	0	0	copy fasta	MSL2	chr3	136143917	136201335
MSL3_chrX_11753237_11780772	1/1	t0001	721	251	78	48	86	12	25	copy fasta	MSL3	chrX	11753237	11780772
MSL3_chrX_11753237_11780772	0/0	t0002	721	44	2	5	33	1	3	copy fasta	MSL3	chrX	11753237	11780772
MSL3_chrX_11753237_11780772	0/0	t0003	723	1	0	0	1	0	0	copy fasta	MSL3	chrX	11753237	11780772
MSL3_chrX_11753237_11780772	0/0	t0004	721	1	0	0	1	0	0	copy fasta	MSL3	chrX	11753237	11780772
MSLN_chr16_755734_773862	1/0	t0001	329	244	44	51	105	9	34	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/1	t0002	329	85	18	10	45	2	9	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	t0003	329	30	20	2	4	1	3	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	t0004	329	15	8	7	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	t0005	329	4	3	1	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	t0006	328	2	1	1	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	t0007	328	2	2	0	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	t0008	304	1	0	1	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	t0009	329	1	1	0	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	t0010	329	1	0	0	1	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	t0011	339	1	0	0	1	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	t0012	329	1	0	1	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSLN_chr16_755734_773862	0/0	t0013	329	1	1	0	0	0	0	copy fasta	MSLN	chr16	755734	773862
MSMB_chr10_46028313_46051269	1/1	t0001	142	446	88	68	228	18	42	copy fasta	MSMB	chr10	46028313	46051269
MSMO1_chr4_165322669_165348164	1/0	t0001	1346	256	41	45	130	12	27	copy fasta	MSMO1	chr4	165322669	165348164
MSMO1_chr4_165322669_165348164	0/1	t0002	1346	145	19	28	76	4	17	copy fasta	MSMO1	chr4	165322669	165348164
MSMO1_chr4_165322669_165348164	0/0	t0003	1346	34	34	0	0	0	0	copy fasta	MSMO1	chr4	165322669	165348164
MSMO1_chr4_165322669_165348164	0/0	t0004	1346	10	0	8	2	0	0	copy fasta	MSMO1	chr4	165322669	165348164
MSMO1_chr4_165322669_165348164	0/0	t0005	1340	5	5	0	0	0	0	copy fasta	MSMO1	chr4	165322669	165348164
MSMO1_chr4_165322669_165348164	0/0	t0006	1346	4	0	0	4	0	0	copy fasta	MSMO1	chr4	165322669	165348164
MSMO1_chr4_165322669_165348164	0/0	t0007	1346	2	0	2	0	0	0	copy fasta	MSMO1	chr4	165322669	165348164
MSMO1_chr4_165322669_165348164	0/0	t0008	1346	1	0	0	1	0	0	copy fasta	MSMO1	chr4	165322669	165348164
MSMO1_chr4_165322669_165348164	0/0	t0009	1346	1	0	0	0	0	1	copy fasta	MSMO1	chr4	165322669	165348164
MSMO1_chr4_165322669_165348164	0/0	t0010	1346	1	1	0	0	0	0	copy fasta	MSMO1	chr4	165322669	165348164
MSMO1_chr4_165322669_165348164	0/0	t0011	1346	1	0	1	0	0	0	copy fasta	MSMO1	chr4	165322669	165348164
MSMO1_chr4_165322669_165348164	0/0	t0012	1346	1	0	0	0	0	1	copy fasta	MSMO1	chr4	165322669	165348164
MSMO1_chr4_165322669_165348164	0/0	t0013	1346	1	0	0	1	0	0	copy fasta	MSMO1	chr4	165322669	165348164
MSMP_chr9_35747990_35759276	1/1	t0001	258	424	90	68	208	14	42	copy fasta	MSMP	chr9	35747990	35759276
MSN_chrX_65662654_65746931	1/1	t0001	2227	112	3	19	67	7	14	copy fasta	MSN	chrX	65662654	65746931
MSN_chrX_65662654_65746931	0/0	t0002	2227	36	33	2	0	0	1	copy fasta	MSN	chrX	65662654	65746931
MSN_chrX_65662654_65746931	0/0	t0003	2227	5	5	0	0	0	0	copy fasta	MSN	chrX	65662654	65746931
MSN_chrX_65662654_65746931	0/0	t0004	2227	4	3	1	0	0	0	copy fasta	MSN	chrX	65662654	65746931
MSN_chrX_65662654_65746931	0/0	t0005	2227	3	3	0	0	0	0	copy fasta	MSN	chrX	65662654	65746931
MSN_chrX_65662654_65746931	0/0	t0006	2227	2	0	2	0	0	0	copy fasta	MSN	chrX	65662654	65746931
MSN_chrX_65662654_65746931	0/0	t0007	2227	2	2	0	0	0	0	copy fasta	MSN	chrX	65662654	65746931
MSN_chrX_65662654_65746931	0/0	t0008	2227	1	0	0	0	0	1	copy fasta	MSN	chrX	65662654	65746931
MSN_chrX_65662654_65746931	0/0	t0009	2227	1	0	1	0	0	0	copy fasta	MSN	chrX	65662654	65746931
MSN_chrX_65662654_65746931	0/0	t0010	2227	1	1	0	0	0	0	copy fasta	MSN	chrX	65662654	65746931
MSN_chrX_65662654_65746931	0/0	t0011	2227	1	0	1	0	0	0	copy fasta	MSN	chrX	65662654	65746931
MSN_chrX_65662654_65746931	0/0	t0012	2227	1	1	0	0	0	0	copy fasta	MSN	chrX	65662654	65746931