JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MSN_chrX_65662654_65746931	0/0	t0013	2227	1	1	0	0	0	0	copy fasta	MSN	chrX	65662654	65746931
MSR1_chr8_16102881_16197651	0/0	t0001	2261	117	22	18	53	9	15	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0002	2262	33	2	14	11	1	5	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0003	2267	30	1	2	26	0	1	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0004	2261	27	9	5	12	0	1	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0005	2262	10	3	4	3	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0006	2263	9	8	1	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0007	2268	9	4	3	0	0	2	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0008	2269	8	7	1	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0009	2264	6	4	2	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	1/0	t0010	2263	6	1	1	0	0	3	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0011	2263	6	1	1	1	0	3	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0012	2261	6	0	0	6	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0013	2243	4	0	2	0	0	2	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0014	2264	4	4	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0015	2268	4	3	1	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0016	2262	4	0	0	4	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/1	t0017	2261	3	0	0	2	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0018	2264	3	3	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0019	2263	3	3	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0020	2267	2	0	0	2	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0021	2263	2	0	2	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0022	2262	2	0	1	1	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0023	2261	2	0	0	2	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0024	2261	2	2	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0025	2264	2	2	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0026	2268	2	0	0	0	2	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0027	2261	1	0	0	1	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0028	2263	1	0	0	0	0	1	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0029	2261	1	1	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0030	2263	1	1	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0031	2262	1	1	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0032	2261	1	1	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0033	2262	1	1	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0034	2262	1	0	1	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0035	2261	1	0	1	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0036	2244	1	0	1	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0037	2262	1	0	1	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0038	2261	1	0	0	0	1	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0039	2261	1	0	0	1	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0040	2263	1	1	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0041	2264	1	1	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0042	2268	1	1	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0043	2270	1	1	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0044	2270	1	1	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0045	2270	1	1	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0046	2270	1	1	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0047	2269	1	1	0	0	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0048	2267	1	0	0	1	0	0	copy fasta	MSR1	chr8	16102881	16197651
MSR1_chr8_16102881_16197651	0/0	t0049	2262	1	0	0	0	1	0	copy fasta	MSR1	chr8	16102881	16197651