JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MSR1_chr8_16102881_16197651	0/0	t0050	2268	1	0	0	0	0	1	copy fasta	MSR1	chr8	16102881	16197651
MSRA_chr8_10049292_10433891	0/1	t0001	805	109	13	29	38	9	19	copy fasta	MSRA	chr8	10049292	10433891
MSRA_chr8_10049292_10433891	0/0	t0002	805	72	19	8	36	1	8	copy fasta	MSRA	chr8	10049292	10433891
MSRA_chr8_10049292_10433891	0/0	t0003	805	61	20	16	19	0	6	copy fasta	MSRA	chr8	10049292	10433891
MSRA_chr8_10049292_10433891	0/0	t0004	805	19	17	0	0	0	2	copy fasta	MSRA	chr8	10049292	10433891
MSRA_chr8_10049292_10433891	1/0	t0005	805	5	4	0	0	0	0	copy fasta	MSRA	chr8	10049292	10433891
MSRA_chr8_10049292_10433891	0/0	t0006	805	4	0	0	4	0	0	copy fasta	MSRA	chr8	10049292	10433891
MSRA_chr8_10049292_10433891	0/0	t0007	805	3	3	0	0	0	0	copy fasta	MSRA	chr8	10049292	10433891
MSRA_chr8_10049292_10433891	0/0	t0008	805	2	0	1	1	0	0	copy fasta	MSRA	chr8	10049292	10433891
MSRA_chr8_10049292_10433891	0/0	t0009	805	2	2	0	0	0	0	copy fasta	MSRA	chr8	10049292	10433891
MSRA_chr8_10049292_10433891	0/0	t0010	805	1	0	0	1	0	0	copy fasta	MSRA	chr8	10049292	10433891
MSRA_chr8_10049292_10433891	0/0	t0011	805	1	0	0	1	0	0	copy fasta	MSRA	chr8	10049292	10433891
MSRA_chr8_10049292_10433891	0/0	t0012	805	1	0	0	0	0	1	copy fasta	MSRA	chr8	10049292	10433891
MSRA_chr8_10049292_10433891	0/0	t0013	805	1	0	0	1	0	0	copy fasta	MSRA	chr8	10049292	10433891
MSRA_chr8_10049292_10433891	0/0	t0014	805	1	0	0	0	0	1	copy fasta	MSRA	chr8	10049292	10433891
MSRA_chr8_10049292_10433891	0/0	t0015	805	1	0	0	0	0	1	copy fasta	MSRA	chr8	10049292	10433891
MSRA_chr8_10049292_10433891	0/0	t0016	805	1	1	0	0	0	0	copy fasta	MSRA	chr8	10049292	10433891
MSRA_chr8_10049292_10433891	0/0	t0017	805	1	0	0	1	0	0	copy fasta	MSRA	chr8	10049292	10433891
MSRA_chr8_10049292_10433891	0/0	t0018	805	1	1	0	0	0	0	copy fasta	MSRA	chr8	10049292	10433891
MSRB1_chr16_1933229_1948199	1/1	t0001	927	403	63	79	197	14	48	copy fasta	MSRB1	chr16	1933229	1948199
MSRB1_chr16_1933229_1948199	0/0	t0002	927	13	13	0	0	0	0	copy fasta	MSRB1	chr16	1933229	1948199
MSRB1_chr16_1933229_1948199	0/0	t0003	927	11	8	3	0	0	0	copy fasta	MSRB1	chr16	1933229	1948199
MSRB1_chr16_1933229_1948199	0/0	t0004	927	9	8	1	0	0	0	copy fasta	MSRB1	chr16	1933229	1948199
MSRB1_chr16_1933229_1948199	0/0	t0005	927	4	4	0	0	0	0	copy fasta	MSRB1	chr16	1933229	1948199
MSRB1_chr16_1933229_1948199	0/0	t0006	927	3	2	1	0	0	0	copy fasta	MSRB1	chr16	1933229	1948199
MSRB1_chr16_1933229_1948199	0/0	t0007	927	2	0	0	0	2	0	copy fasta	MSRB1	chr16	1933229	1948199
MSRB1_chr16_1933229_1948199	0/0	t0008	927	1	0	0	1	0	0	copy fasta	MSRB1	chr16	1933229	1948199
MSRB1_chr16_1933229_1948199	0/0	t0009	927	1	0	0	1	0	0	copy fasta	MSRB1	chr16	1933229	1948199
MSRB1_chr16_1933229_1948199	0/0	t0010	927	1	0	0	1	0	0	copy fasta	MSRB1	chr16	1933229	1948199
MSRB2_chr10_23090579_23127013	1/1	t0001	1182	357	65	69	177	16	28	copy fasta	MSRB2	chr10	23090579	23127013
MSRB2_chr10_23090579_23127013	0/0	t0002	1182	48	22	4	12	2	8	copy fasta	MSRB2	chr10	23090579	23127013
MSRB2_chr10_23090579_23127013	0/0	t0003	1183	17	0	0	12	0	5	copy fasta	MSRB2	chr10	23090579	23127013
MSRB2_chr10_23090579_23127013	0/0	t0004	1182	4	4	0	0	0	0	copy fasta	MSRB2	chr10	23090579	23127013
MSRB2_chr10_23090579_23127013	0/0	t0005	1182	2	0	2	0	0	0	copy fasta	MSRB2	chr10	23090579	23127013
MSRB2_chr10_23090579_23127013	0/0	t0006	1182	2	0	0	2	0	0	copy fasta	MSRB2	chr10	23090579	23127013
MSRB2_chr10_23090579_23127013	0/0	t0007	1182	2	2	0	0	0	0	copy fasta	MSRB2	chr10	23090579	23127013
MSRB2_chr10_23090579_23127013	0/0	t0008	1182	2	0	0	2	0	0	copy fasta	MSRB2	chr10	23090579	23127013
MSRB2_chr10_23090579_23127013	0/0	t0009	1182	1	1	0	0	0	0	copy fasta	MSRB2	chr10	23090579	23127013
MSRB2_chr10_23090579_23127013	0/0	t0010	1175	1	0	0	1	0	0	copy fasta	MSRB2	chr10	23090579	23127013
MSRB2_chr10_23090579_23127013	0/0	t0011	1183	1	0	0	1	0	0	copy fasta	MSRB2	chr10	23090579	23127013
MSRB2_chr10_23090579_23127013	0/0	t0012	1182	1	0	0	0	0	1	copy fasta	MSRB2	chr10	23090579	23127013
MSRB2_chr10_23090579_23127013	0/0	t0013	1182	1	0	0	1	0	0	copy fasta	MSRB2	chr10	23090579	23127013
MSRB2_chr10_23090579_23127013	0/0	t0014	1182	1	0	0	1	0	0	copy fasta	MSRB2	chr10	23090579	23127013
MSRB2_chr10_23090579_23127013	0/0	t0015	1182	1	0	0	1	0	0	copy fasta	MSRB2	chr10	23090579	23127013
MSRB2_chr10_23090579_23127013	0/0	t0016	1182	1	0	1	0	0	0	copy fasta	MSRB2	chr10	23090579	23127013
MSRB3_chr12_65273683_65471907	1/0	t0001	3820	114	23	16	47	5	22	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/1	t0002	3821	91	17	14	47	5	7	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/0	t0003	3820	25	4	18	0	1	2	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/0	t0004	3821	15	14	1	0	0	0	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/0	t0005	3821	14	1	0	11	1	1	copy fasta	MSRB3	chr12	65273683	65471907