JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MSRB3_chr12_65273683_65471907	0/0	t0006	3821	9	9	0	0	0	0	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/0	t0007	3820	7	0	4	3	0	0	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/0	t0008	3821	6	6	0	0	0	0	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/0	t0009	3821	5	5	0	0	0	0	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/0	t0010	3821	4	1	2	0	0	1	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/0	t0011	3821	3	3	0	0	0	0	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/0	t0012	3820	2	0	0	2	0	0	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/0	t0013	3821	2	2	0	0	0	0	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/0	t0014	3821	2	0	0	2	0	0	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/0	t0015	3821	1	0	0	1	0	0	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/0	t0016	3821	1	0	1	0	0	0	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/0	t0017	3821	1	1	0	0	0	0	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/0	t0018	3821	1	0	0	0	0	1	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/0	t0019	3820	1	0	1	0	0	0	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/0	t0020	3820	1	1	0	0	0	0	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/0	t0021	3820	1	0	1	0	0	0	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/0	t0022	3820	1	0	0	1	0	0	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/0	t0023	3821	1	1	0	0	0	0	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/0	t0024	3821	1	1	0	0	0	0	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/0	t0025	3821	1	1	0	0	0	0	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/0	t0026	3820	1	0	0	1	0	0	copy fasta	MSRB3	chr12	65273683	65471907
MSRB3_chr12_65273683_65471907	0/0	t0027	3821	1	0	0	1	0	0	copy fasta	MSRB3	chr12	65273683	65471907
MSS51_chr10_73418579_73438561	1/1	t0001	1041	289	69	42	145	5	26	copy fasta	MSS51	chr10	73418579	73438561
MSS51_chr10_73418579_73438561	0/0	t0002	1039	14	12	2	0	0	0	copy fasta	MSS51	chr10	73418579	73438561
MSS51_chr10_73418579_73438561	0/0	t0003	1041	7	0	0	0	1	6	copy fasta	MSS51	chr10	73418579	73438561
MSS51_chr10_73418579_73438561	0/0	t0004	1041	1	1	0	0	0	0	copy fasta	MSS51	chr10	73418579	73438561
MSS51_chr10_73418579_73438561	0/0	t0005	1041	1	1	0	0	0	0	copy fasta	MSS51	chr10	73418579	73438561
MSS51_chr10_73418579_73438561	0/0	t0006	1041	1	1	0	0	0	0	copy fasta	MSS51	chr10	73418579	73438561
MSS51_chr10_73418579_73438561	0/0	t0007	1041	1	1	0	0	0	0	copy fasta	MSS51	chr10	73418579	73438561
MSS51_chr10_73418579_73438561	0/0	t0008	1039	1	1	0	0	0	0	copy fasta	MSS51	chr10	73418579	73438561
MSS51_chr10_73418579_73438561	0/0	t0009	1041	1	0	0	1	0	0	copy fasta	MSS51	chr10	73418579	73438561
MST1R_chr3_49882002_49908873	1/1	t0001	570	289	94	64	79	12	38	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	t0002	570	7	0	0	7	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1R_chr3_49882002_49908873	0/0	t0003	570	2	2	0	0	0	0	copy fasta	MST1R	chr3	49882002	49908873
MST1_chr3_49678947_49694474	0/1	t0001	865	298	89	65	100	13	30	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	t0002	865	12	1	1	1	5	4	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	t0003	865	3	3	0	0	0	0	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	1/0	t0004	865	3	2	0	0	0	0	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	t0005	865	2	0	0	0	0	2	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	t0006	865	1	0	0	1	0	0	copy fasta	MST1	chr3	49678947	49694474
MST1_chr3_49678947_49694474	0/0	t0007	865	1	1	0	0	0	0	copy fasta	MST1	chr3	49678947	49694474
MSTN_chr2_190050700_190067729	1/1	t0001	1692	266	39	56	128	11	30	copy fasta	MSTN	chr2	190050700	190067729
MSTN_chr2_190050700_190067729	0/0	t0002	1692	47	4	6	36	0	1	copy fasta	MSTN	chr2	190050700	190067729
MSTN_chr2_190050700_190067729	0/0	t0003	1692	23	21	2	0	0	0	copy fasta	MSTN	chr2	190050700	190067729
MSTN_chr2_190050700_190067729	0/0	t0004	1692	18	18	0	0	0	0	copy fasta	MSTN	chr2	190050700	190067729
MSTN_chr2_190050700_190067729	0/0	t0005	1692	12	0	4	0	1	7	copy fasta	MSTN	chr2	190050700	190067729
MSTN_chr2_190050700_190067729	0/0	t0006	1692	5	5	0	0	0	0	copy fasta	MSTN	chr2	190050700	190067729
MSTN_chr2_190050700_190067729	0/0	t0007	1692	5	5	0	0	0	0	copy fasta	MSTN	chr2	190050700	190067729
MSTN_chr2_190050700_190067729	0/0	t0008	1691	3	3	0	0	0	0	copy fasta	MSTN	chr2	190050700	190067729
MSTN_chr2_190050700_190067729	0/0	t0009	1692	2	2	0	0	0	0	copy fasta	MSTN	chr2	190050700	190067729