JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MSTN_chr2_190050700_190067729	0/0	t0010	1692	2	0	2	0	0	0	copy fasta	MSTN	chr2	190050700	190067729
MSTN_chr2_190050700_190067729	0/0	t0011	1692	1	1	0	0	0	0	copy fasta	MSTN	chr2	190050700	190067729
MSTO1_chr1_155605218_155619951	1/1	t0001	710	347	85	61	138	17	44	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	t0002	710	27	0	0	27	0	0	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	t0003	710	7	7	0	0	0	0	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	t0004	710	3	0	1	0	1	1	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	t0005	710	3	0	3	0	0	0	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	t0006	710	3	0	0	3	0	0	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	t0007	710	2	2	0	0	0	0	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	t0008	710	1	0	0	1	0	0	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	t0009	710	1	1	0	0	0	0	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	t0010	710	1	0	0	1	0	0	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	t0011	710	1	0	1	0	0	0	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	t0012	710	1	0	0	0	0	1	copy fasta	MSTO1	chr1	155605218	155619951
MSTO1_chr1_155605218_155619951	0/0	t0013	710	1	1	0	0	0	0	copy fasta	MSTO1	chr1	155605218	155619951
MSX1_chr4_4854665_4868936	0/0	t0001	1020	62	1	14	42	3	2	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	1/0	t0002	1029	43	4	9	14	4	11	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0003	1022	32	13	5	11	1	2	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/1	t0004	1030	18	1	3	11	0	2	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0005	1031	17	1	4	10	0	2	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0006	1028	17	2	0	12	0	3	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0007	1023	17	0	6	11	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0008	1015	17	15	2	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0009	1030	15	2	3	6	1	3	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0010	1022	14	0	1	12	0	1	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0011	1023	14	1	1	7	2	3	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0012	1021	11	0	3	4	3	1	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0013	1033	10	0	0	10	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0014	1023	10	2	0	6	0	2	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0015	1023	10	3	0	7	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0016	1024	9	1	3	2	0	3	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0017	1014	7	1	3	0	0	3	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0018	1032	6	3	0	3	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0019	1022	6	4	2	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0020	1019	5	0	1	4	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0021	1025	5	0	1	4	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0022	1016	4	0	2	0	0	2	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0023	1022	4	4	0	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0024	1031	4	1	0	3	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0025	1024	4	0	3	1	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0026	1022	4	0	4	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0027	1029	3	0	1	0	0	2	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0028	1030	3	3	0	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0029	1021	3	0	0	3	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0030	1025	3	3	0	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0031	1016	2	2	0	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0032	1014	2	2	0	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0033	1021	2	1	0	1	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0034	1019	2	0	1	0	1	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0035	1021	2	0	2	0	0	0	copy fasta	MSX1	chr4	4854665	4868936