Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARHGEF3_chr3_56722420_56806949	0/0	t0012	2002	1	0	1	0	0	0	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	t0013	2002	1	0	0	0	0	1	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	t0014	2002	1	0	0	1	0	0	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	t0015	2002	1	0	0	1	0	0	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	t0016	2002	1	1	0	0	0	0	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	t0017	1998	1	1	0	0	0	0	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF3_chr3_56722420_56806949	0/0	t0018	2002	1	0	0	1	0	0	copy fasta	ARHGEF3	chr3	56722420	56806949
ARHGEF40_chr14_21065304_21095248	1/1	t0001	1334	349	71	72	139	16	49	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	t0002	1334	7	6	1	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	t0003	1334	5	5	0	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	t0004	1334	4	4	0	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	t0005	1334	4	0	0	4	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	t0006	1334	2	1	1	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	t0007	1334	2	2	0	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	t0008	1334	2	0	0	2	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	t0009	1334	2	0	0	2	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	t0010	1334	1	1	0	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	t0011	1334	1	0	0	1	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	t0012	1334	1	0	0	1	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	t0013	1334	1	0	0	0	0	1	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	t0014	1334	1	1	0	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	t0015	1334	1	0	0	1	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	t0016	1334	1	1	0	0	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	t0017	1334	1	0	0	1	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF40_chr14_21065304_21095248	0/0	t0018	1334	1	0	0	1	0	0	copy fasta	ARHGEF40	chr14	21065304	21095248
ARHGEF4_chr2_130831914_131052253	1/1	t0001	1105	115	48	14	26	2	23	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	t0002	1105	8	7	1	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	t0003	1105	6	6	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	t0004	1106	6	4	2	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	t0005	1105	4	3	1	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	t0006	1105	2	2	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	t0007	1105	1	0	0	0	0	1	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	t0008	1105	1	1	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF4_chr2_130831914_131052253	0/0	t0009	1105	1	1	0	0	0	0	copy fasta	ARHGEF4	chr2	130831914	131052253
ARHGEF5_chr7_144350402_144385632	0/0	t0001	689	162	31	32	66	10	23	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	1/1	t0002	689	112	34	28	26	7	15	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	t0003	689	11	11	0	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	t0004	689	2	0	2	0	0	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF5_chr7_144350402_144385632	0/0	t0005	689	1	0	0	0	1	0	copy fasta	ARHGEF5	chr7	144350402	144385632
ARHGEF6_chrX_136660550_136785932	1/1	t0001	2530	206	55	38	86	6	19	copy fasta	ARHGEF6	chrX	136660550	136785932
ARHGEF6_chrX_136660550_136785932	0/0	t0002	2530	8	7	1	0	0	0	copy fasta	ARHGEF6	chrX	136660550	136785932
ARHGEF6_chrX_136660550_136785932	0/0	t0003	2530	6	0	2	4	0	0	copy fasta	ARHGEF6	chrX	136660550	136785932
ARHGEF6_chrX_136660550_136785932	0/0	t0004	2530	5	2	1	1	1	0	copy fasta	ARHGEF6	chrX	136660550	136785932
ARHGEF6_chrX_136660550_136785932	0/0	t0005	2530	5	0	0	5	0	0	copy fasta	ARHGEF6	chrX	136660550	136785932
ARHGEF6_chrX_136660550_136785932	0/0	t0006	2530	2	0	0	0	0	2	copy fasta	ARHGEF6	chrX	136660550	136785932
ARHGEF6_chrX_136660550_136785932	0/0	t0007	2530	2	0	0	2	0	0	copy fasta	ARHGEF6	chrX	136660550	136785932
ARHGEF6_chrX_136660550_136785932	0/0	t0008	2530	1	0	0	0	0	1	copy fasta	ARHGEF6	chrX	136660550	136785932
ARHGEF6_chrX_136660550_136785932	0/0	t0009	2526	1	1	0	0	0	0	copy fasta	ARHGEF6	chrX	136660550	136785932
ARHGEF6_chrX_136660550_136785932	0/0	t0010	2529	1	0	0	1	0	0	copy fasta	ARHGEF6	chrX	136660550	136785932
ARHGEF6_chrX_136660550_136785932	0/0	t0011	2525	1	0	0	1	0	0	copy fasta	ARHGEF6	chrX	136660550	136785932