JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MSX1_chr4_4854665_4868936	0/0	t0036	1024	2	2	0	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0037	1022	2	0	1	1	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0038	1027	2	2	0	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0039	1025	2	1	1	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0040	1022	2	2	0	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0041	1031	1	0	0	0	0	1	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0042	1022	1	0	0	1	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0043	1015	1	0	0	0	1	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0044	1021	1	1	0	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0045	1034	1	0	0	1	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0046	1032	1	0	0	0	0	1	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0047	1027	1	0	1	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0048	1027	1	1	0	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0049	1026	1	0	0	0	0	1	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0050	1024	1	0	0	1	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0051	1025	1	1	0	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0052	1020	1	0	0	1	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0053	1015	1	0	0	1	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0054	1013	1	0	0	0	0	1	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0055	1012	1	1	0	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0056	1024	1	1	0	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0057	1024	1	1	0	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0058	1022	1	0	0	1	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0059	1020	1	1	0	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0060	1022	1	0	0	1	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0061	1020	1	1	0	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0062	1018	1	0	0	1	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0063	1020	1	0	0	1	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0064	1021	1	1	0	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0065	1022	1	0	1	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0066	1025	1	0	0	1	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0067	1022	1	0	1	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0068	1023	1	0	0	1	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0069	1021	1	0	0	1	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0070	1015	1	1	0	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0071	1028	1	1	0	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0072	1024	1	1	0	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0073	1023	1	0	1	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0074	1021	1	0	1	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0075	1014	1	0	1	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0076	1014	1	0	1	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0077	1024	1	1	0	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0078	1030	1	0	0	1	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0079	1022	1	0	1	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0080	1027	1	1	0	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0081	1030	1	1	0	0	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0082	1020	1	0	0	1	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX1_chr4_4854665_4868936	0/0	t0083	1019	1	0	0	1	0	0	copy fasta	MSX1	chr4	4854665	4868936
MSX2_chr5_174719582_174735896	0/1	t0001	1393	247	39	51	115	10	31	copy fasta	MSX2	chr5	174719582	174735896
MSX2_chr5_174719582_174735896	0/0	t0002	1393	40	29	6	4	1	0	copy fasta	MSX2	chr5	174719582	174735896