JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MSX2_chr5_174719582_174735896	0/0	t0003	1394	25	1	1	20	0	3	copy fasta	MSX2	chr5	174719582	174735896
MSX2_chr5_174719582_174735896	0/0	t0004	1393	18	14	1	0	0	3	copy fasta	MSX2	chr5	174719582	174735896
MSX2_chr5_174719582_174735896	0/0	t0005	1393	9	9	0	0	0	0	copy fasta	MSX2	chr5	174719582	174735896
MSX2_chr5_174719582_174735896	1/0	t0006	1392	3	1	1	0	0	0	copy fasta	MSX2	chr5	174719582	174735896
MSX2_chr5_174719582_174735896	0/0	t0007	1393	3	3	0	0	0	0	copy fasta	MSX2	chr5	174719582	174735896
MSX2_chr5_174719582_174735896	0/0	t0008	1393	3	0	2	0	1	0	copy fasta	MSX2	chr5	174719582	174735896
MSX2_chr5_174719582_174735896	0/0	t0009	1393	2	0	0	2	0	0	copy fasta	MSX2	chr5	174719582	174735896
MSX2_chr5_174719582_174735896	0/0	t0010	1393	1	0	1	0	0	0	copy fasta	MSX2	chr5	174719582	174735896
MSX2_chr5_174719582_174735896	0/0	t0011	1393	1	1	0	0	0	0	copy fasta	MSX2	chr5	174719582	174735896
MSX2_chr5_174719582_174735896	0/0	t0012	1393	1	0	0	1	0	0	copy fasta	MSX2	chr5	174719582	174735896
MSX2_chr5_174719582_174735896	0/0	t0013	1393	1	1	0	0	0	0	copy fasta	MSX2	chr5	174719582	174735896
MSX2_chr5_174719582_174735896	0/0	t0014	1394	1	0	0	0	0	1	copy fasta	MSX2	chr5	174719582	174735896
MSX2_chr5_174719582_174735896	0/0	t0015	1393	1	0	1	0	0	0	copy fasta	MSX2	chr5	174719582	174735896
MT1A_chr16_56633666_56645087	1/1	t0001	211	446	98	79	201	18	48	copy fasta	MT1A	chr16	56633666	56645087
MT1A_chr16_56633666_56645087	0/0	t0002	211	1	0	1	0	0	0	copy fasta	MT1A	chr16	56633666	56645087
MT1A_chr16_56633666_56645087	0/0	t0003	211	1	0	0	1	0	0	copy fasta	MT1A	chr16	56633666	56645087
MT1B_chr16_56646886_56658204	1/1	t0001	208	286	68	49	126	11	30	copy fasta	MT1B	chr16	56646886	56658204
MT1B_chr16_56646886_56658204	0/0	t0002	207	164	24	29	91	5	15	copy fasta	MT1B	chr16	56646886	56658204
MT1B_chr16_56646886_56658204	0/0	t0003	208	4	4	0	0	0	0	copy fasta	MT1B	chr16	56646886	56658204
MT1B_chr16_56646886_56658204	0/0	t0004	207	1	0	0	1	0	0	copy fasta	MT1B	chr16	56646886	56658204
MT1B_chr16_56646886_56658204	0/0	t0005	207	1	0	0	0	0	1	copy fasta	MT1B	chr16	56646886	56658204
MT1E_chr16_56620781_56632112	1/1	t0001	363	345	77	60	157	16	33	copy fasta	MT1E	chr16	56620781	56632112
MT1E_chr16_56620781_56632112	0/0	t0002	363	68	3	11	47	2	5	copy fasta	MT1E	chr16	56620781	56632112
MT1E_chr16_56620781_56632112	0/0	t0003	363	25	13	8	0	0	4	copy fasta	MT1E	chr16	56620781	56632112
MT1E_chr16_56620781_56632112	0/0	t0004	363	7	0	5	0	0	2	copy fasta	MT1E	chr16	56620781	56632112
MT1E_chr16_56620781_56632112	0/0	t0005	363	6	5	0	0	0	1	copy fasta	MT1E	chr16	56620781	56632112
MT1E_chr16_56620781_56632112	0/0	t0006	363	4	0	0	1	0	3	copy fasta	MT1E	chr16	56620781	56632112
MT1E_chr16_56620781_56632112	0/0	t0007	363	1	0	0	1	0	0	copy fasta	MT1E	chr16	56620781	56632112
MT1E_chr16_56620781_56632112	0/0	t0008	363	1	0	0	1	0	0	copy fasta	MT1E	chr16	56620781	56632112
MT1E_chr16_56620781_56632112	0/0	t0009	702	1	0	0	1	0	0	copy fasta	MT1E	chr16	56620781	56632112
MT1F_chr16_56652959_56664303	1/1	t0001	240	429	88	65	219	14	41	copy fasta	MT1F	chr16	56652959	56664303
MT1F_chr16_56652959_56664303	0/0	t0002	240	24	2	15	0	2	5	copy fasta	MT1F	chr16	56652959	56664303
MT1F_chr16_56652959_56664303	0/0	t0003	240	7	7	0	0	0	0	copy fasta	MT1F	chr16	56652959	56664303
MT1F_chr16_56652959_56664303	0/0	t0004	240	1	1	0	0	0	0	copy fasta	MT1F	chr16	56652959	56664303
MT1F_chr16_56652959_56664303	0/0	t0005	240	1	0	0	1	0	0	copy fasta	MT1F	chr16	56652959	56664303
MT1G_chr16_56661730_56673065	1/1	t0001	222	367	89	58	167	12	39	copy fasta	MT1G	chr16	56661730	56673065
MT1G_chr16_56661730_56673065	0/0	t0002	222	71	7	13	41	4	6	copy fasta	MT1G	chr16	56661730	56673065
MT1G_chr16_56661730_56673065	0/0	t0003	222	30	1	13	13	0	3	copy fasta	MT1G	chr16	56661730	56673065
MT1G_chr16_56661730_56673065	0/0	t0004	222	1	0	0	1	0	0	copy fasta	MT1G	chr16	56661730	56673065
MT1G_chr16_56661730_56673065	0/0	t0005	222	1	1	0	0	0	0	copy fasta	MT1G	chr16	56661730	56673065
MT1HL1_chr1_236999103_237009441	1/1	t0001	154	466	100	82	220	16	46	copy fasta	MT1HL1	chr1	236999103	237009441
MT1HL1_chr1_236999103_237009441	0/0	t0002	154	2	0	2	0	0	0	copy fasta	MT1HL1	chr1	236999103	237009441
MT1H_chr16_56664814_56676129	1/1	t0001	212	338	81	56	150	12	37	copy fasta	MT1H	chr16	56664814	56676129
MT1H_chr16_56664814_56676129	0/0	t0002	213	71	1	13	47	4	6	copy fasta	MT1H	chr16	56664814	56676129
MT1H_chr16_56664814_56676129	0/0	t0003	213	41	12	13	13	0	3	copy fasta	MT1H	chr16	56664814	56676129
MT1M_chr16_56627659_56638981	0/1	t0001	213	312	52	70	140	12	37	copy fasta	MT1M	chr16	56627659	56638981
MT1M_chr16_56627659_56638981	1/0	t0002	213	84	18	9	45	2	9	copy fasta	MT1M	chr16	56627659	56638981
MT1M_chr16_56627659_56638981	0/0	t0003	213	44	23	2	17	2	0	copy fasta	MT1M	chr16	56627659	56638981
MT1M_chr16_56627659_56638981	0/0	t0004	213	2	0	0	0	2	0	copy fasta	MT1M	chr16	56627659	56638981
MT1M_chr16_56627659_56638981	0/0	t0005	213	2	2	0	0	0	0	copy fasta	MT1M	chr16	56627659	56638981