JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MT1M_chr16_56627659_56638981	0/0	t0006	213	1	1	0	0	0	0	copy fasta	MT1M	chr16	56627659	56638981
MT1M_chr16_56627659_56638981	0/0	t0007	213	1	0	1	0	0	0	copy fasta	MT1M	chr16	56627659	56638981
MT1X_chr16_56677470_56689196	0/1	t0001	218	205	30	33	111	9	21	copy fasta	MT1X	chr16	56677470	56689196
MT1X_chr16_56677470_56689196	0/0	t0002	219	175	25	41	81	7	21	copy fasta	MT1X	chr16	56677470	56689196
MT1X_chr16_56677470_56689196	0/0	t0003	217	24	2	3	18	0	1	copy fasta	MT1X	chr16	56677470	56689196
MT1X_chr16_56677470_56689196	0/0	t0004	220	20	7	3	10	0	0	copy fasta	MT1X	chr16	56677470	56689196
MT1X_chr16_56677470_56689196	0/0	t0005	219	14	14	0	0	0	0	copy fasta	MT1X	chr16	56677470	56689196
MT1X_chr16_56677470_56689196	0/0	t0006	217	7	7	0	0	0	0	copy fasta	MT1X	chr16	56677470	56689196
MT1X_chr16_56677470_56689196	0/0	t0007	218	1	0	0	1	0	0	copy fasta	MT1X	chr16	56677470	56689196
MT1X_chr16_56677470_56689196	0/0	t0008	219	1	0	0	1	0	0	copy fasta	MT1X	chr16	56677470	56689196
MT1X_chr16_56677470_56689196	0/0	t0009	218	1	1	0	0	0	0	copy fasta	MT1X	chr16	56677470	56689196
MT1X_chr16_56677470_56689196	0/0	t0010	219	1	0	0	0	0	1	copy fasta	MT1X	chr16	56677470	56689196
MT2A_chr16_56603584_56614497	0/0	t0001	216	364	72	62	178	16	36	copy fasta	MT2A	chr16	56603584	56614497
MT2A_chr16_56603584_56614497	0/0	t0002	216	92	22	13	43	0	14	copy fasta	MT2A	chr16	56603584	56614497
MT2A_chr16_56603584_56614497	0/0	t0003	216	1	0	0	1	0	0	copy fasta	MT2A	chr16	56603584	56614497
MT2A_chr16_56603584_56614497	0/0	t0004	216	1	0	1	0	0	0	copy fasta	MT2A	chr16	56603584	56614497
MT3_chr16_56584528_56596085	1/1	t0001	200	433	80	78	221	14	38	copy fasta	MT3	chr16	56584528	56596085
MT3_chr16_56584528_56596085	0/0	t0002	200	2	2	0	0	0	0	copy fasta	MT3	chr16	56584528	56596085
MT3_chr16_56584528_56596085	0/0	t0003	200	2	2	0	0	0	0	copy fasta	MT3	chr16	56584528	56596085
MT3_chr16_56584528_56596085	0/0	t0004	200	1	0	0	1	0	0	copy fasta	MT3	chr16	56584528	56596085
MT4_chr16_56560073_56573957	1/1	t0001	82	427	90	73	202	18	42	copy fasta	MT4	chr16	56560073	56573957
MT4_chr16_56560073_56573957	0/0	t0002	82	1	0	1	0	0	0	copy fasta	MT4	chr16	56560073	56573957
MTA1_chr14_105414827_105475729	1/1	t0001	724	293	77	67	100	11	36	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	0/0	t0002	724	6	5	1	0	0	0	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	0/0	t0003	724	1	0	0	0	1	0	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	0/0	t0004	724	1	0	0	1	0	0	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	0/0	t0005	724	1	1	0	0	0	0	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	0/0	t0006	724	1	1	0	0	0	0	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	0/0	t0007	705	1	0	0	1	0	0	copy fasta	MTA1	chr14	105414827	105475729
MTA2_chr11_62588214_62606865	1/0	t0001	1077	210	58	38	85	6	22	copy fasta	MTA2	chr11	62588214	62606865
MTA2_chr11_62588214_62606865	0/0	t0002	1077	36	7	14	10	0	5	copy fasta	MTA2	chr11	62588214	62606865
MTA2_chr11_62588214_62606865	0/0	t0003	1078	28	8	4	11	0	5	copy fasta	MTA2	chr11	62588214	62606865
MTA2_chr11_62588214_62606865	0/0	t0004	1077	18	0	0	18	0	0	copy fasta	MTA2	chr11	62588214	62606865
MTA2_chr11_62588214_62606865	0/1	t0005	1077	16	1	5	9	0	0	copy fasta	MTA2	chr11	62588214	62606865
MTA2_chr11_62588214_62606865	0/0	t0006	1075	11	0	0	11	0	0	copy fasta	MTA2	chr11	62588214	62606865
MTA2_chr11_62588214_62606865	0/0	t0007	1077	10	8	2	0	0	0	copy fasta	MTA2	chr11	62588214	62606865
MTA2_chr11_62588214_62606865	0/0	t0008	1076	8	2	1	3	1	1	copy fasta	MTA2	chr11	62588214	62606865
MTA2_chr11_62588214_62606865	0/0	t0009	1078	7	0	3	3	1	0	copy fasta	MTA2	chr11	62588214	62606865
MTA2_chr11_62588214_62606865	0/0	t0010	1078	3	0	1	0	0	2	copy fasta	MTA2	chr11	62588214	62606865
MTA2_chr11_62588214_62606865	0/0	t0011	1078	2	0	1	0	1	0	copy fasta	MTA2	chr11	62588214	62606865
MTA2_chr11_62588214_62606865	0/0	t0012	1078	2	0	2	0	0	0	copy fasta	MTA2	chr11	62588214	62606865
MTA2_chr11_62588214_62606865	0/0	t0013	1077	1	0	1	0	0	0	copy fasta	MTA2	chr11	62588214	62606865
MTA2_chr11_62588214_62606865	0/0	t0014	1076	1	0	0	1	0	0	copy fasta	MTA2	chr11	62588214	62606865
MTA2_chr11_62588214_62606865	0/0	t0015	1077	1	0	1	0	0	0	copy fasta	MTA2	chr11	62588214	62606865
MTA2_chr11_62588214_62606865	0/0	t0016	1077	1	0	0	0	0	1	copy fasta	MTA2	chr11	62588214	62606865
MTA2_chr11_62588214_62606865	0/0	t0017	1076	1	1	0	0	0	0	copy fasta	MTA2	chr11	62588214	62606865
MTA2_chr11_62588214_62606865	0/0	t0018	1063	1	0	1	0	0	0	copy fasta	MTA2	chr11	62588214	62606865
MTA2_chr11_62588214_62606865	0/0	t0019	1076	1	0	0	1	0	0	copy fasta	MTA2	chr11	62588214	62606865
MTA2_chr11_62588214_62606865	0/0	t0020	1077	1	0	0	0	1	0	copy fasta	MTA2	chr11	62588214	62606865
MTA2_chr11_62588214_62606865	0/0	t0021	1074	1	0	0	1	0	0	copy fasta	MTA2	chr11	62588214	62606865