JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTARC1_chr1_220781913_220824659	0/0	t0019	6274	2	2	0	0	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0020	6274	2	0	0	0	0	2	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0021	6210	2	0	1	0	0	1	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0022	6274	2	2	0	0	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0023	6274	2	1	1	0	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0024	6274	1	1	0	0	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0025	6274	1	0	0	1	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0026	6274	1	0	0	1	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0027	6210	1	0	0	1	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0028	6274	1	0	0	1	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0029	6210	1	0	0	0	0	1	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0030	6274	1	0	1	0	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0031	6210	1	0	0	0	0	1	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0032	6210	1	0	1	0	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0033	6210	1	0	0	1	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0034	6210	1	0	0	1	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0035	6210	1	1	0	0	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0036	6274	1	0	1	0	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0037	6274	1	0	0	0	0	1	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0038	6274	1	0	1	0	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0039	6274	1	1	0	0	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0040	6274	1	1	0	0	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0041	6274	1	0	1	0	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0042	6274	1	1	0	0	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0043	6274	1	1	0	0	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0044	6274	1	1	0	0	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0045	6274	1	1	0	0	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0046	6274	1	0	0	1	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0047	6274	1	0	1	0	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0048	6274	1	1	0	0	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC2_chr1_220743322_220789815	1/1	t0001	1139	366	76	60	177	11	40	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	t0002	1139	15	0	0	13	1	1	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	t0003	1139	7	7	0	0	0	0	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	t0004	1139	3	3	0	0	0	0	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	t0005	1139	2	2	0	0	0	0	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	t0006	1139	1	0	0	0	0	1	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	t0007	1139	1	1	0	0	0	0	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	t0008	1139	1	1	0	0	0	0	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	t0009	1139	1	1	0	0	0	0	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	t0010	1139	1	1	0	0	0	0	copy fasta	MTARC2	chr1	220743322	220789815
MTBP_chr8_120440419_120528636	1/1	t0001	353	352	90	62	150	10	38	copy fasta	MTBP	chr8	120440419	120528636
MTCH1_chr6_36963141_36991196	1/0	t0001	786	370	72	61	187	9	40	copy fasta	MTCH1	chr6	36963141	36991196
MTCH1_chr6_36963141_36991196	0/0	t0002	786	25	21	4	0	0	0	copy fasta	MTCH1	chr6	36963141	36991196
MTCH1_chr6_36963141_36991196	0/0	t0003	786	8	2	2	0	3	1	copy fasta	MTCH1	chr6	36963141	36991196
MTCH1_chr6_36963141_36991196	0/1	t0004	786	6	0	3	0	2	0	copy fasta	MTCH1	chr6	36963141	36991196
MTCH1_chr6_36963141_36991196	0/0	t0005	786	1	0	0	1	0	0	copy fasta	MTCH1	chr6	36963141	36991196
MTCH1_chr6_36963141_36991196	0/0	t0006	786	1	0	0	0	0	1	copy fasta	MTCH1	chr6	36963141	36991196
MTCH1_chr6_36963141_36991196	0/0	t0007	786	1	0	1	0	0	0	copy fasta	MTCH1	chr6	36963141	36991196
MTCH1_chr6_36963141_36991196	0/0	t0008	786	1	1	0	0	0	0	copy fasta	MTCH1	chr6	36963141	36991196
MTCH1_chr6_36963141_36991196	0/0	t0009	786	1	0	1	0	0	0	copy fasta	MTCH1	chr6	36963141	36991196