JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTCH2_chr11_47612317_47647559	0/1	t0001	1611	325	56	59	158	11	40	copy fasta	MTCH2	chr11	47612317	47647559
MTCH2_chr11_47612317_47647559	0/0	t0002	1611	16	16	0	0	0	0	copy fasta	MTCH2	chr11	47612317	47647559
MTCH2_chr11_47612317_47647559	0/0	t0003	1611	6	0	3	0	1	2	copy fasta	MTCH2	chr11	47612317	47647559
MTCH2_chr11_47612317_47647559	0/0	t0004	1611	5	5	0	0	0	0	copy fasta	MTCH2	chr11	47612317	47647559
MTCH2_chr11_47612317_47647559	1/0	t0005	1611	5	4	0	0	0	0	copy fasta	MTCH2	chr11	47612317	47647559
MTCH2_chr11_47612317_47647559	0/0	t0006	1611	4	4	0	0	0	0	copy fasta	MTCH2	chr11	47612317	47647559
MTCH2_chr11_47612317_47647559	0/0	t0007	1607	3	3	0	0	0	0	copy fasta	MTCH2	chr11	47612317	47647559
MTCH2_chr11_47612317_47647559	0/0	t0008	1611	1	0	1	0	0	0	copy fasta	MTCH2	chr11	47612317	47647559
MTCH2_chr11_47612317_47647559	0/0	t0009	1611	1	0	0	1	0	0	copy fasta	MTCH2	chr11	47612317	47647559
MTCH2_chr11_47612317_47647559	0/0	t0010	1611	1	0	0	1	0	0	copy fasta	MTCH2	chr11	47612317	47647559
MTCH2_chr11_47612317_47647559	0/0	t0011	1611	1	1	0	0	0	0	copy fasta	MTCH2	chr11	47612317	47647559
MTCH2_chr11_47612317_47647559	0/0	t0012	1611	1	1	0	0	0	0	copy fasta	MTCH2	chr11	47612317	47647559
MTCH2_chr11_47612317_47647559	0/0	t0013	1611	1	0	1	0	0	0	copy fasta	MTCH2	chr11	47612317	47647559
MTCL1_chr18_8700556_8837778	1/0	t0001	1044	106	47	18	34	3	3	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0002	1056	38	3	15	17	0	3	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0003	1044	37	11	2	22	1	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/1	t0004	1047	29	6	5	11	1	5	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0005	1038	24	8	3	12	0	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0006	1056	18	1	3	11	1	2	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0007	1047	15	1	4	8	1	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0008	1038	14	0	2	12	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0009	1062	6	0	1	4	0	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0010	1044	6	0	0	0	0	6	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0011	1035	4	1	2	0	0	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0012	1035	4	2	1	0	1	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0013	1047	3	0	1	0	1	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0014	1044	3	0	0	3	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0015	1038	3	0	0	3	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0016	1059	2	1	0	0	0	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0017	1047	2	0	0	2	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0018	1044	2	0	2	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0019	1044	2	2	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0020	1044	2	0	0	2	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0021	1047	2	1	1	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0022	1074	1	0	0	0	1	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0023	1056	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0024	1059	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0025	1056	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0026	1056	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0027	1044	1	1	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0028	1044	1	0	0	1	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0029	1044	1	1	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0030	1044	1	1	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0031	1047	1	0	1	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0032	1038	1	0	0	0	0	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0033	1038	1	1	0	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0034	1038	1	0	0	0	0	1	copy fasta	MTCL1	chr18	8700556	8837778
MTCL1_chr18_8700556_8837778	0/0	t0035	1032	1	0	1	0	0	0	copy fasta	MTCL1	chr18	8700556	8837778
MTCP1_chrX_155059034_155076136	1/1	t0001	1861	281	72	54	110	12	31	copy fasta	MTCP1	chrX	155059034	155076136
MTCP1_chrX_155059034_155076136	0/0	t0002	1862	15	0	2	12	1	0	copy fasta	MTCP1	chrX	155059034	155076136