JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTCP1_chrX_155059034_155076136	0/0	t0003	1861	1	0	0	0	0	1	copy fasta	MTCP1	chrX	155059034	155076136
MTDH_chr8_97639184_97735260	0/0	t0001	5922	63	7	8	40	1	7	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	1/0	t0002	5914	60	2	14	33	3	7	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0003	5922	39	3	5	23	0	8	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0004	5913	28	5	6	16	0	1	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0005	5913	12	11	1	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0006	5920	10	10	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0007	5923	8	0	4	3	0	1	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0008	5923	8	7	1	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0009	5923	6	0	0	6	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0010	5914	6	0	1	4	0	1	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0011	5923	6	1	0	5	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0012	5913	6	6	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0013	5923	5	3	1	0	0	1	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0014	5915	5	0	0	5	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0015	5922	4	0	1	0	0	3	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0016	5914	4	4	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0017	5923	3	0	0	3	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0018	5923	3	3	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0019	5915	3	3	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0020	5923	3	0	0	1	1	1	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0021	5923	3	1	0	2	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0022	5919	3	3	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0023	5923	3	3	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0024	5914	2	0	2	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0025	5915	2	0	0	2	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0026	5923	2	0	0	2	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0027	5914	2	0	2	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0028	5913	2	0	0	0	0	2	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0029	5922	2	0	0	2	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0030	5924	2	0	1	1	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0031	5923	2	2	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0032	5922	2	0	0	0	0	2	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0033	5914	1	0	0	0	0	1	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0034	5924	1	0	0	0	0	1	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0035	5923	1	1	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0036	5923	1	0	0	1	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0037	5922	1	1	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0038	5924	1	1	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0039	5924	1	1	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0040	5924	1	0	1	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0041	5924	1	1	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0042	5914	1	1	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0043	5925	1	0	0	1	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0044	5923	1	0	0	1	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0045	5922	1	0	1	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0046	5922	1	0	0	1	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0047	5924	1	0	0	1	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0048	5921	1	0	0	1	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0049	5923	1	0	1	0	0	0	copy fasta	MTDH	chr8	97639184	97735260