JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTDH_chr8_97639184_97735260	0/0	t0050	5924	1	0	0	1	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0051	5922	1	1	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0052	5923	1	1	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0053	5921	1	0	1	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0054	5921	1	1	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0055	5920	1	1	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0056	5920	1	1	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0057	5915	1	1	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0058	5915	1	1	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0059	5916	1	0	0	1	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0060	5913	1	0	1	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0061	5915	1	0	0	1	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0062	5916	1	0	0	0	0	1	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0063	5913	1	0	0	0	0	1	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0064	5911	1	0	0	1	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0065	5915	1	1	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0066	5914	1	0	0	0	0	1	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0067	5913	1	0	0	1	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0068	5913	1	1	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0069	5915	1	0	0	1	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0070	5921	1	1	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0071	5915	1	0	0	1	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0072	5921	1	0	0	1	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0073	5915	1	0	0	1	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0074	5925	1	0	1	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0075	5923	1	0	1	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0076	5922	1	0	1	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0077	5923	1	0	0	1	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0078	5922	1	0	0	0	0	1	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0079	5921	1	0	1	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0080	5915	1	0	0	1	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0081	5914	1	0	0	1	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0082	5914	1	0	0	1	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0083	5914	1	0	0	0	1	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0084	5913	1	0	1	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0085	5912	1	1	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0086	5923	1	1	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/1	t0087	5914	1	0	0	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0088	5920	1	0	0	1	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0089	5922	1	0	0	1	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0090	5923	1	0	0	1	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0091	5923	1	0	1	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0092	5922	1	0	1	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTDH_chr8_97639184_97735260	0/0	t0093	5922	1	0	1	0	0	0	copy fasta	MTDH	chr8	97639184	97735260
MTERF1_chr7_91865929_91885702	0/0	t0001	2742	148	21	26	78	5	18	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	1/0	t0002	2742	118	36	22	37	7	15	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	t0003	2742	64	0	5	56	0	3	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	t0004	2742	23	15	2	5	0	1	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	t0005	2742	21	1	1	19	0	0	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/1	t0006	2742	20	1	7	6	1	4	copy fasta	MTERF1	chr7	91865929	91885702