JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTERF1_chr7_91865929_91885702	0/0	t0007	2742	10	0	6	4	0	0	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	t0008	2742	6	2	4	0	0	0	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	t0009	2742	6	6	0	0	0	0	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	t0010	2742	6	5	1	0	0	0	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	t0011	2742	4	4	0	0	0	0	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	t0012	2742	3	0	0	3	0	0	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	t0013	2742	2	2	0	0	0	0	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	t0014	2742	2	0	0	2	0	0	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	t0015	2742	1	0	0	1	0	0	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	t0016	2742	1	0	0	0	0	1	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	t0017	2742	1	1	0	0	0	0	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	t0018	2742	1	0	1	0	0	0	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	t0019	2742	1	0	1	0	0	0	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	t0020	2742	1	0	0	0	1	0	copy fasta	MTERF1	chr7	91865929	91885702
MTERF1_chr7_91865929_91885702	0/0	t0021	2742	1	0	0	1	0	0	copy fasta	MTERF1	chr7	91865929	91885702
MTERF2_chr12_106972277_106992146	0/0	t0001	625	173	21	43	91	4	14	copy fasta	MTERF2	chr12	106972277	106992146
MTERF2_chr12_106972277_106992146	0/0	t0002	625	126	46	15	48	3	14	copy fasta	MTERF2	chr12	106972277	106992146
MTERF2_chr12_106972277_106992146	0/1	t0003	627	120	4	19	76	7	13	copy fasta	MTERF2	chr12	106972277	106992146
MTERF2_chr12_106972277_106992146	1/0	t0004	627	25	11	5	1	2	5	copy fasta	MTERF2	chr12	106972277	106992146
MTERF2_chr12_106972277_106992146	0/0	t0005	625	6	6	0	0	0	0	copy fasta	MTERF2	chr12	106972277	106992146
MTERF2_chr12_106972277_106992146	0/0	t0006	625	3	3	0	0	0	0	copy fasta	MTERF2	chr12	106972277	106992146
MTERF2_chr12_106972277_106992146	0/0	t0007	625	2	2	0	0	0	0	copy fasta	MTERF2	chr12	106972277	106992146
MTERF2_chr12_106972277_106992146	0/0	t0008	627	1	1	0	0	0	0	copy fasta	MTERF2	chr12	106972277	106992146
MTERF3_chr8_96234402_96266610	1/1	t0001	210	239	42	54	102	6	33	copy fasta	MTERF3	chr8	96234402	96266610
MTERF3_chr8_96234402_96266610	0/0	t0002	210	37	21	1	14	0	1	copy fasta	MTERF3	chr8	96234402	96266610
MTERF3_chr8_96234402_96266610	0/0	t0003	210	18	17	1	0	0	0	copy fasta	MTERF3	chr8	96234402	96266610
MTERF4_chr2_241090571_241107287	0/0	t0001	442	189	59	25	96	2	7	copy fasta	MTERF4	chr2	241090571	241107287
MTERF4_chr2_241090571_241107287	1/1	t0002	442	189	26	35	83	10	33	copy fasta	MTERF4	chr2	241090571	241107287
MTERF4_chr2_241090571_241107287	0/0	t0003	438	5	4	1	0	0	0	copy fasta	MTERF4	chr2	241090571	241107287
MTERF4_chr2_241090571_241107287	0/0	t0004	442	5	0	0	5	0	0	copy fasta	MTERF4	chr2	241090571	241107287
MTERF4_chr2_241090571_241107287	0/0	t0005	442	4	3	1	0	0	0	copy fasta	MTERF4	chr2	241090571	241107287
MTERF4_chr2_241090571_241107287	0/0	t0006	442	3	0	0	3	0	0	copy fasta	MTERF4	chr2	241090571	241107287
MTERF4_chr2_241090571_241107287	0/0	t0007	442	2	0	0	0	0	2	copy fasta	MTERF4	chr2	241090571	241107287
MTERF4_chr2_241090571_241107287	0/0	t0008	442	1	0	0	1	0	0	copy fasta	MTERF4	chr2	241090571	241107287
MTF1_chr1_37804574_37864592	0/1	t0001	5676	91	19	16	42	2	11	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0002	5676	71	9	18	37	2	5	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0003	5676	38	2	5	25	4	2	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0004	5675	34	9	0	22	0	3	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0005	5676	32	19	7	0	0	6	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0006	5675	21	0	5	8	1	7	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0007	5676	10	0	0	10	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0008	5675	10	0	8	0	1	1	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0009	5677	5	5	0	0	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0010	5675	5	2	1	2	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0011	5676	5	0	0	5	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0012	5674	5	5	0	0	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0013	5675	4	0	0	4	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0014	5676	4	4	0	0	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0015	5675	4	1	0	3	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0016	5675	3	0	1	2	0	0	copy fasta	MTF1	chr1	37804574	37864592