JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTF1_chr1_37804574_37864592	0/0	t0017	5675	2	0	0	2	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0018	5676	2	0	0	0	2	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0019	5676	2	1	1	0	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0020	5676	2	0	0	2	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0021	5675	1	0	1	0	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0022	5674	1	0	1	0	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0023	5677	1	0	0	1	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0024	5677	1	1	0	0	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0025	5675	1	0	0	1	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0026	5675	1	1	0	0	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0027	5676	1	0	1	0	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0028	5676	1	0	0	0	0	1	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0029	5676	1	1	0	0	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	1/0	t0030	5676	1	0	0	0	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0031	5676	1	0	0	0	0	1	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0032	5676	1	0	0	1	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0033	5675	1	0	0	1	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0034	5676	1	0	0	0	1	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0035	5674	1	1	0	0	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0036	5675	1	0	0	0	1	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0037	5675	1	0	0	1	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0038	5676	1	1	0	0	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0039	5676	1	0	0	0	0	1	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0040	5677	1	0	0	1	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0041	5676	1	0	0	0	0	1	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0042	5675	1	0	0	1	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0043	5675	1	0	0	1	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0044	5675	1	0	0	0	0	1	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0045	5675	1	0	1	0	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF1_chr1_37804574_37864592	0/0	t0046	5676	1	1	0	0	0	0	copy fasta	MTF1	chr1	37804574	37864592
MTF2_chr1_93074283_93144076	0/0	t0001	2296	153	32	28	74	6	13	copy fasta	MTF2	chr1	93074283	93144076
MTF2_chr1_93074283_93144076	1/0	t0002	2294	79	4	17	48	3	6	copy fasta	MTF2	chr1	93074283	93144076
MTF2_chr1_93074283_93144076	0/0	t0003	2296	75	35	14	13	4	9	copy fasta	MTF2	chr1	93074283	93144076
MTF2_chr1_93074283_93144076	0/0	t0004	2296	6	6	0	0	0	0	copy fasta	MTF2	chr1	93074283	93144076
MTF2_chr1_93074283_93144076	0/0	t0005	2296	4	4	0	0	0	0	copy fasta	MTF2	chr1	93074283	93144076
MTF2_chr1_93074283_93144076	0/0	t0006	2296	4	3	1	0	0	0	copy fasta	MTF2	chr1	93074283	93144076
MTF2_chr1_93074283_93144076	0/1	t0007	2296	4	0	2	0	1	0	copy fasta	MTF2	chr1	93074283	93144076
MTF2_chr1_93074283_93144076	0/0	t0008	2293	4	0	1	3	0	0	copy fasta	MTF2	chr1	93074283	93144076
MTF2_chr1_93074283_93144076	0/0	t0009	2296	1	0	0	0	0	1	copy fasta	MTF2	chr1	93074283	93144076
MTF2_chr1_93074283_93144076	0/0	t0010	2295	1	1	0	0	0	0	copy fasta	MTF2	chr1	93074283	93144076
MTF2_chr1_93074283_93144076	0/0	t0011	2296	1	0	0	1	0	0	copy fasta	MTF2	chr1	93074283	93144076
MTF2_chr1_93074283_93144076	0/0	t0012	2296	1	0	1	0	0	0	copy fasta	MTF2	chr1	93074283	93144076
MTF2_chr1_93074283_93144076	0/0	t0013	2296	1	1	0	0	0	0	copy fasta	MTF2	chr1	93074283	93144076
MTF2_chr1_93074283_93144076	0/0	t0014	2294	1	0	0	1	0	0	copy fasta	MTF2	chr1	93074283	93144076
MTF2_chr1_93074283_93144076	0/0	t0015	2294	1	1	0	0	0	0	copy fasta	MTF2	chr1	93074283	93144076
MTF2_chr1_93074283_93144076	0/0	t0016	2294	1	0	0	0	0	1	copy fasta	MTF2	chr1	93074283	93144076
MTF2_chr1_93074283_93144076	0/0	t0017	2294	1	0	0	1	0	0	copy fasta	MTF2	chr1	93074283	93144076
MTF2_chr1_93074283_93144076	0/0	t0018	2296	1	1	0	0	0	0	copy fasta	MTF2	chr1	93074283	93144076
MTF2_chr1_93074283_93144076	0/0	t0019	2295	1	0	0	1	0	0	copy fasta	MTF2	chr1	93074283	93144076
MTFMT_chr15_64996512_65034639	0/0	t0001	1577	112	11	19	70	7	5	copy fasta	MTFMT	chr15	64996512	65034639