JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTFMT_chr15_64996512_65034639	0/1	t0002	1578	62	9	14	18	3	17	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0003	1583	18	9	0	7	0	2	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0004	1577	16	16	0	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0005	1577	11	11	0	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0006	1577	11	1	7	0	0	3	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0007	1578	11	3	4	2	1	1	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0008	1579	10	5	2	3	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0009	1577	7	3	4	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0010	1577	6	6	0	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	1/0	t0011	1577	6	5	0	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0012	1577	6	4	0	0	1	1	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0013	1576	4	0	0	3	1	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0014	1578	4	0	3	1	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0015	1577	4	0	0	4	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0016	1577	3	1	1	0	1	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0017	1577	3	0	0	0	0	3	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0018	1577	3	2	1	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0019	1578	3	3	0	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0020	1577	2	2	0	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0021	1577	2	0	0	2	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0022	1578	2	0	2	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0023	1577	1	1	0	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0024	1576	1	0	1	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0025	1576	1	0	1	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0026	1576	1	0	1	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0027	1576	1	1	0	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0028	1577	1	1	0	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0029	1577	1	1	0	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0030	1583	1	1	0	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0031	1577	1	0	0	1	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0032	1577	1	1	0	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0033	1577	1	0	0	1	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0034	1577	1	1	0	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0035	1577	1	1	0	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0036	1577	1	0	0	1	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0037	1577	1	0	0	1	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0038	1578	1	1	0	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0039	1578	1	0	0	0	0	1	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0040	1578	1	0	1	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0041	1584	1	0	0	0	0	1	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0042	1579	1	0	1	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0043	1579	1	0	1	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFMT_chr15_64996512_65034639	0/0	t0044	1579	1	0	1	0	0	0	copy fasta	MTFMT	chr15	64996512	65034639
MTFP1_chr22_30420768_30434054	1/1	t0001	633	409	74	77	195	16	45	copy fasta	MTFP1	chr22	30420768	30434054
MTFP1_chr22_30420768_30434054	0/0	t0002	633	17	16	1	0	0	0	copy fasta	MTFP1	chr22	30420768	30434054
MTFP1_chr22_30420768_30434054	0/0	t0003	633	8	0	4	0	2	2	copy fasta	MTFP1	chr22	30420768	30434054
MTFP1_chr22_30420768_30434054	0/0	t0004	634	5	4	1	0	0	0	copy fasta	MTFP1	chr22	30420768	30434054
MTFP1_chr22_30420768_30434054	0/0	t0005	633	2	1	1	0	0	0	copy fasta	MTFP1	chr22	30420768	30434054
MTFP1_chr22_30420768_30434054	0/0	t0006	633	1	0	0	0	0	1	copy fasta	MTFP1	chr22	30420768	30434054
MTFP1_chr22_30420768_30434054	0/0	t0007	633	1	0	0	1	0	0	copy fasta	MTFP1	chr22	30420768	30434054