JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTFP1_chr22_30420768_30434054	0/0	t0008	633	1	1	0	0	0	0	copy fasta	MTFP1	chr22	30420768	30434054
MTFR1L_chr1_25814954_25837938	0/0	t0001	1077	178	4	40	103	8	23	copy fasta	MTFR1L	chr1	25814954	25837938
MTFR1L_chr1_25814954_25837938	0/1	t0002	1077	90	2	16	60	3	8	copy fasta	MTFR1L	chr1	25814954	25837938
MTFR1L_chr1_25814954_25837938	0/0	t0003	1077	48	36	8	4	0	0	copy fasta	MTFR1L	chr1	25814954	25837938
MTFR1L_chr1_25814954_25837938	1/0	t0004	1075	35	14	6	7	3	4	copy fasta	MTFR1L	chr1	25814954	25837938
MTFR1L_chr1_25814954_25837938	0/0	t0005	1077	18	17	1	0	0	0	copy fasta	MTFR1L	chr1	25814954	25837938
MTFR1L_chr1_25814954_25837938	0/0	t0006	1077	15	14	1	0	0	0	copy fasta	MTFR1L	chr1	25814954	25837938
MTFR1L_chr1_25814954_25837938	0/0	t0007	1077	7	7	0	0	0	0	copy fasta	MTFR1L	chr1	25814954	25837938
MTFR1L_chr1_25814954_25837938	0/0	t0008	1077	3	0	0	3	0	0	copy fasta	MTFR1L	chr1	25814954	25837938
MTFR1L_chr1_25814954_25837938	0/0	t0009	1077	3	3	0	0	0	0	copy fasta	MTFR1L	chr1	25814954	25837938
MTFR1L_chr1_25814954_25837938	0/0	t0010	1077	1	0	0	0	0	1	copy fasta	MTFR1L	chr1	25814954	25837938
MTFR1L_chr1_25814954_25837938	0/0	t0011	1077	1	0	1	0	0	0	copy fasta	MTFR1L	chr1	25814954	25837938
MTFR1L_chr1_25814954_25837938	0/0	t0012	1077	1	0	0	1	0	0	copy fasta	MTFR1L	chr1	25814954	25837938
MTFR1L_chr1_25814954_25837938	0/0	t0013	1077	1	1	0	0	0	0	copy fasta	MTFR1L	chr1	25814954	25837938
MTFR1L_chr1_25814954_25837938	0/0	t0014	1040	1	0	1	0	0	0	copy fasta	MTFR1L	chr1	25814954	25837938
MTFR1_chr8_65639734_65715562	1/1	t0001	1650	262	70	52	103	7	28	copy fasta	MTFR1	chr8	65639734	65715562
MTFR1_chr8_65639734_65715562	0/0	t0002	1650	33	3	10	10	6	4	copy fasta	MTFR1	chr8	65639734	65715562
MTFR1_chr8_65639734_65715562	0/0	t0003	1646	20	1	5	12	1	1	copy fasta	MTFR1	chr8	65639734	65715562
MTFR1_chr8_65639734_65715562	0/0	t0004	1650	14	0	2	12	0	0	copy fasta	MTFR1	chr8	65639734	65715562
MTFR1_chr8_65639734_65715562	0/0	t0005	1650	6	6	0	0	0	0	copy fasta	MTFR1	chr8	65639734	65715562
MTFR1_chr8_65639734_65715562	0/0	t0006	1650	3	0	2	0	0	1	copy fasta	MTFR1	chr8	65639734	65715562
MTFR1_chr8_65639734_65715562	0/0	t0007	1648	3	0	0	3	0	0	copy fasta	MTFR1	chr8	65639734	65715562
MTFR1_chr8_65639734_65715562	0/0	t0008	1650	3	3	0	0	0	0	copy fasta	MTFR1	chr8	65639734	65715562
MTFR1_chr8_65639734_65715562	0/0	t0009	1650	1	0	0	0	0	1	copy fasta	MTFR1	chr8	65639734	65715562
MTFR1_chr8_65639734_65715562	0/0	t0010	1650	1	0	1	0	0	0	copy fasta	MTFR1	chr8	65639734	65715562
MTFR1_chr8_65639734_65715562	0/0	t0011	1646	1	1	0	0	0	0	copy fasta	MTFR1	chr8	65639734	65715562
MTFR1_chr8_65639734_65715562	0/0	t0012	1650	1	0	0	0	0	1	copy fasta	MTFR1	chr8	65639734	65715562
MTFR2_chr6_136226034_136255311	1/1	t0001	632	392	95	75	177	16	27	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	t0002	632	10	0	0	10	0	0	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	t0003	632	8	0	0	8	0	0	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	t0004	632	5	0	0	5	0	0	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	t0005	610	1	0	0	0	0	1	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	t0006	632	1	0	1	0	0	0	copy fasta	MTFR2	chr6	136226034	136255311
MTFR2_chr6_136226034_136255311	0/0	t0007	632	1	1	0	0	0	0	copy fasta	MTFR2	chr6	136226034	136255311
MTG1_chr10_133389157_133427520	0/1	t0001	2421	95	5	18	53	6	12	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0002	2420	78	9	14	43	4	8	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0003	2420	36	26	3	5	1	1	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0004	2431	27	1	4	20	0	2	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0005	2430	24	0	4	18	0	2	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0006	2432	24	0	8	11	2	3	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0007	2433	19	0	3	12	2	2	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0008	2420	18	14	2	2	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0009	2429	18	2	0	14	0	2	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0010	2420	11	1	8	0	1	1	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0011	2422	11	0	4	4	0	3	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0012	2420	4	3	1	0	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0013	2419	4	3	1	0	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0014	2420	4	4	0	0	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0015	2421	4	0	4	0	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0016	2419	4	3	1	0	0	0	copy fasta	MTG1	chr10	133389157	133427520