JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTG1_chr10_133389157_133427520	0/0	t0017	2434	4	0	0	4	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0018	2420	3	0	0	3	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0019	2421	3	3	0	0	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0020	2421	2	1	0	1	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0021	2422	2	2	0	0	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0022	2423	2	0	1	0	1	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0023	2420	2	0	2	0	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0024	2435	2	0	0	2	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0025	2429	2	0	0	2	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0026	2431	1	0	0	1	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	1/0	t0027	2420	1	0	0	0	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0028	2419	1	1	0	0	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0029	2420	1	0	0	0	0	1	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0030	2420	1	1	0	0	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0031	2429	1	0	0	1	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0032	2420	1	1	0	0	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0033	2420	1	1	0	0	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0034	2420	1	1	0	0	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0035	2420	1	1	0	0	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0036	2420	1	1	0	0	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0037	2422	1	0	1	0	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0038	2423	1	0	1	0	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0039	2423	1	0	0	1	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0040	2421	1	0	0	1	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0041	2421	1	1	0	0	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0042	2422	1	1	0	0	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0043	2421	1	1	0	0	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0044	2433	1	0	0	0	0	1	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0045	2429	1	0	0	0	1	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0046	2437	1	1	0	0	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0047	2420	1	1	0	0	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0048	2420	1	1	0	0	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0049	2421	1	1	0	0	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG1_chr10_133389157_133427520	0/0	t0050	2420	1	1	0	0	0	0	copy fasta	MTG1	chr10	133389157	133427520
MTG2_chr20_62178028_62208568	0/0	t0001	2527	76	1	12	57	2	4	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	1/0	t0002	2527	62	23	20	9	3	6	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0003	2519	59	12	12	25	3	7	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0004	2526	48	5	10	21	3	9	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0005	2523	16	5	2	9	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0006	2523	16	0	9	5	0	2	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0007	2527	15	10	0	0	0	5	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0008	2527	14	0	2	8	2	2	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/1	t0009	2527	12	5	1	5	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0010	2527	7	0	0	7	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0011	2527	5	5	0	0	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0012	2519	5	0	0	5	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0013	2527	4	3	1	0	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0014	2527	4	3	1	0	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0015	2527	4	0	2	0	2	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0016	2523	4	4	0	0	0	0	copy fasta	MTG2	chr20	62178028	62208568