JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTG2_chr20_62178028_62208568	0/0	t0017	2526	3	0	0	3	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0018	2526	3	0	0	3	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0019	2528	3	3	0	0	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0020	2528	3	3	0	0	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0021	2528	3	1	2	0	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0022	2527	3	2	1	0	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0023	2527	2	2	0	0	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0024	2526	2	0	0	2	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0025	2527	2	0	0	2	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0026	2520	2	0	0	1	0	1	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0027	2518	2	0	0	0	1	1	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0028	2527	2	1	1	0	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0029	2527	1	0	0	1	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0030	2525	1	0	0	0	1	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0031	2526	1	0	0	1	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0032	2528	1	0	0	1	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0033	2525	1	0	0	1	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0034	2527	1	0	0	0	0	1	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0035	2527	1	0	1	0	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0036	2527	1	0	0	0	0	1	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0037	2527	1	0	0	0	0	1	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0038	2527	1	0	0	1	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0039	2527	1	0	0	1	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0040	2527	1	0	0	1	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0041	2527	1	1	0	0	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0042	2527	1	1	0	0	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0043	2527	1	1	0	0	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0044	2527	1	1	0	0	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0045	2527	1	0	0	0	0	1	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0046	2523	1	0	1	0	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0047	2519	1	0	0	1	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0048	2485	1	0	0	0	0	1	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0049	2519	1	0	0	1	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0050	2527	1	0	0	1	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0051	2524	1	0	0	1	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0052	2523	1	0	0	1	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0053	2523	1	0	1	0	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0054	2523	1	0	1	0	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0055	2519	1	0	0	1	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0056	2519	1	0	0	0	1	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0057	2523	1	1	0	0	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0058	2527	1	0	0	1	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTG2_chr20_62178028_62208568	0/0	t0059	2523	1	1	0	0	0	0	copy fasta	MTG2	chr20	62178028	62208568
MTHFD1L_chr6_150860702_151106887	1/0	t0001	515	68	30	15	20	2	0	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	t0002	515	26	7	12	1	1	5	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/1	t0003	515	23	8	10	0	2	2	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	t0004	518	22	9	2	6	1	4	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	t0005	515	18	7	0	7	0	4	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	t0006	521	11	7	1	1	1	1	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	t0007	515	11	0	0	6	1	4	copy fasta	MTHFD1L	chr6	150860702	151106887