JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTHFD1L_chr6_150860702_151106887	0/0	t0008	518	7	0	0	5	0	2	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	t0009	521	6	4	1	0	0	1	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	t0010	518	6	1	2	0	1	2	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	t0011	515	5	0	4	0	1	0	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	t0012	521	4	4	0	0	0	0	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	t0013	521	4	3	0	0	0	1	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	t0014	518	4	1	0	0	0	3	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	t0015	515	3	3	0	0	0	0	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	t0016	515	2	2	0	0	0	0	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	t0017	515	1	1	0	0	0	0	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	t0018	470	1	1	0	0	0	0	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	t0019	512	1	1	0	0	0	0	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	t0020	512	1	0	1	0	0	0	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	t0021	512	1	1	0	0	0	0	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1L_chr6_150860702_151106887	0/0	t0022	515	1	0	0	0	0	1	copy fasta	MTHFD1L	chr6	150860702	151106887
MTHFD1_chr14_64383353_64465025	1/1	t0001	347	330	75	53	150	12	38	copy fasta	MTHFD1	chr14	64383353	64465025
MTHFD1_chr14_64383353_64465025	0/0	t0002	347	12	11	1	0	0	0	copy fasta	MTHFD1	chr14	64383353	64465025
MTHFD2L_chr4_74153118_74308099	1/1	t0001	1312	105	27	23	43	1	9	copy fasta	MTHFD2L	chr4	74153118	74308099
MTHFD2L_chr4_74153118_74308099	0/0	t0002	1312	45	28	4	9	0	4	copy fasta	MTHFD2L	chr4	74153118	74308099
MTHFD2L_chr4_74153118_74308099	0/0	t0003	1312	43	13	5	20	1	4	copy fasta	MTHFD2L	chr4	74153118	74308099
MTHFD2L_chr4_74153118_74308099	0/0	t0004	1312	3	3	0	0	0	0	copy fasta	MTHFD2L	chr4	74153118	74308099
MTHFD2L_chr4_74153118_74308099	0/0	t0005	1312	2	2	0	0	0	0	copy fasta	MTHFD2L	chr4	74153118	74308099
MTHFD2L_chr4_74153118_74308099	0/0	t0006	1312	1	0	0	0	0	1	copy fasta	MTHFD2L	chr4	74153118	74308099
MTHFD2L_chr4_74153118_74308099	0/0	t0007	1312	1	1	0	0	0	0	copy fasta	MTHFD2L	chr4	74153118	74308099
MTHFD2_chr2_74193615_74222565	1/1	t0001	3351	213	15	40	123	6	27	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	t0002	3351	72	13	12	38	4	5	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	t0003	3351	52	8	18	24	0	2	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	t0004	3352	15	15	0	0	0	0	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	t0005	3352	9	6	0	3	0	0	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	t0006	3351	8	8	0	0	0	0	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	t0007	3351	7	6	1	0	0	0	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	t0008	3352	6	6	0	0	0	0	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	t0009	3351	3	0	0	3	0	0	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	t0010	3351	3	3	0	0	0	0	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	t0011	3351	3	2	1	0	0	0	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	t0012	3352	2	2	0	0	0	0	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	t0013	3351	2	1	1	0	0	0	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	t0014	3351	2	1	1	0	0	0	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	t0015	3351	2	0	0	0	0	2	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	t0016	3351	2	2	0	0	0	0	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	t0017	3352	1	1	0	0	0	0	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	t0018	3351	1	0	0	1	0	0	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	t0019	3351	1	0	0	1	0	0	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	t0020	3351	1	1	0	0	0	0	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	t0021	3351	1	0	0	1	0	0	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	t0022	3351	1	0	0	0	0	1	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	t0023	3351	1	1	0	0	0	0	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	t0024	3351	1	0	0	1	0	0	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	t0025	3351	1	0	0	0	0	1	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	t0026	3351	1	1	0	0	0	0	copy fasta	MTHFD2	chr2	74193615	74222565