JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTHFD2_chr2_74193615_74222565	0/0	t0027	3351	1	1	0	0	0	0	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	t0028	3351	1	0	0	1	0	0	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFD2_chr2_74193615_74222565	0/0	t0029	3352	1	1	0	0	0	0	copy fasta	MTHFD2	chr2	74193615	74222565
MTHFR_chr1_11780723_11810964	0/0	t0001	5048	140	24	34	64	3	15	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/1	t0002	5051	38	1	6	16	3	11	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0003	5048	35	0	0	34	0	1	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0004	5049	24	0	4	18	0	2	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0005	5049	17	17	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0006	5041	12	6	4	0	1	1	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0007	5049	10	1	3	3	0	3	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0008	5048	10	0	10	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0009	5043	8	8	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0010	5049	6	2	0	1	0	3	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	1/0	t0011	5048	5	3	1	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0012	5048	5	3	2	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0013	5049	4	4	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0014	5041	3	3	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0015	5049	3	2	1	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0016	5043	3	3	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0017	5049	3	0	0	3	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0018	5048	3	3	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0019	5048	3	0	0	0	2	1	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0020	5052	3	0	1	1	0	1	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0021	5049	3	3	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0022	5049	2	2	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0023	5048	2	0	0	2	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0024	5048	2	0	0	2	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0025	5049	2	2	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0026	5047	1	0	0	1	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0027	5049	1	1	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0028	5049	1	1	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0029	5047	1	0	1	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0030	5051	1	0	0	0	1	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0031	5051	1	0	1	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0032	5050	1	0	0	1	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0033	5049	1	0	0	0	0	1	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0034	5047	1	0	0	0	0	1	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0035	5047	1	0	0	1	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0036	5049	1	1	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0037	5049	1	0	0	1	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0038	5049	1	0	0	0	1	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0039	5049	1	1	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0040	5048	1	1	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0041	5049	1	1	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0042	5047	1	0	0	0	0	1	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0043	5060	1	0	0	1	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0044	5049	1	0	0	0	0	1	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0045	5048	1	0	0	1	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0046	5048	1	0	0	1	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0047	5052	1	0	0	0	0	1	copy fasta	MTHFR	chr1	11780723	11810964