JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTHFR_chr1_11780723_11810964	0/0	t0048	5048	1	0	0	0	1	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0049	5052	1	0	0	1	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0050	5048	1	0	0	1	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0051	5048	1	0	1	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0052	5048	1	0	0	0	0	1	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0053	5041	1	1	0	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0054	5049	1	0	0	1	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFR_chr1_11780723_11810964	0/0	t0055	5048	1	0	1	0	0	0	copy fasta	MTHFR	chr1	11780723	11810964
MTHFSD_chr16_86525186_86560235	0/0	t0001	1877	107	12	19	49	10	17	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0002	1877	94	27	20	40	2	5	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/1	t0003	1877	74	5	10	46	1	11	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	1/0	t0004	1877	46	9	5	30	0	1	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0005	1876	8	8	0	0	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0006	1877	8	0	5	0	2	1	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0007	1876	6	1	4	0	0	1	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0008	1876	5	0	0	2	0	3	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0009	1878	5	5	0	0	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0010	1878	5	5	0	0	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0011	1877	5	0	0	5	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0012	1870	4	4	0	0	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0013	1877	3	3	0	0	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0014	1877	3	1	2	0	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0015	1877	3	0	2	0	0	1	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0016	1877	3	3	0	0	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0017	1876	3	2	1	0	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0018	1877	2	2	0	0	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0019	1877	2	2	0	0	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0020	1877	2	0	1	1	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0021	1878	1	0	0	1	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0022	1877	1	0	0	0	0	1	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0023	1877	1	0	0	0	1	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0024	1878	1	0	0	1	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0025	1876	1	1	0	0	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0026	1877	1	0	0	1	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0027	1878	1	0	0	1	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0028	1878	1	1	0	0	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0029	1877	1	0	0	1	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0030	1877	1	0	0	1	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0031	1877	1	0	0	0	0	1	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0032	1876	1	1	0	0	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0033	1878	1	0	0	1	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0034	1878	1	0	0	1	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0035	1877	1	0	1	0	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0036	1877	1	0	0	0	0	1	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0037	1877	1	1	0	0	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0038	1877	1	0	0	1	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0039	1877	1	0	0	0	0	1	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFSD_chr16_86525186_86560235	0/0	t0040	1877	1	1	0	0	0	0	copy fasta	MTHFSD	chr16	86525186	86560235
MTHFS_chr15_79838547_79902014	1/0	t0001	1690	123	34	19	58	2	9	copy fasta	MTHFS	chr15	79838547	79902014
MTHFS_chr15_79838547_79902014	0/0	t0002	1690	98	4	16	65	2	11	copy fasta	MTHFS	chr15	79838547	79902014