JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTHFS_chr15_79838547_79902014	0/0	t0003	1690	43	6	4	32	0	1	copy fasta	MTHFS	chr15	79838547	79902014
MTHFS_chr15_79838547_79902014	0/0	t0004	1690	42	4	11	10	3	14	copy fasta	MTHFS	chr15	79838547	79902014
MTHFS_chr15_79838547_79902014	0/1	t0005	1690	31	11	4	1	5	9	copy fasta	MTHFS	chr15	79838547	79902014
MTHFS_chr15_79838547_79902014	0/0	t0006	1690	19	8	4	4	3	0	copy fasta	MTHFS	chr15	79838547	79902014
MTHFS_chr15_79838547_79902014	0/0	t0007	1690	11	11	0	0	0	0	copy fasta	MTHFS	chr15	79838547	79902014
MTHFS_chr15_79838547_79902014	0/0	t0008	1690	8	1	4	0	1	2	copy fasta	MTHFS	chr15	79838547	79902014
MTHFS_chr15_79838547_79902014	0/0	t0009	1690	6	6	0	0	0	0	copy fasta	MTHFS	chr15	79838547	79902014
MTHFS_chr15_79838547_79902014	0/0	t0010	1690	3	3	0	0	0	0	copy fasta	MTHFS	chr15	79838547	79902014
MTHFS_chr15_79838547_79902014	0/0	t0011	1690	3	2	1	0	0	0	copy fasta	MTHFS	chr15	79838547	79902014
MTHFS_chr15_79838547_79902014	0/0	t0012	1690	2	2	0	0	0	0	copy fasta	MTHFS	chr15	79838547	79902014
MTHFS_chr15_79838547_79902014	0/0	t0013	1690	1	0	1	0	0	0	copy fasta	MTHFS	chr15	79838547	79902014
MTHFS_chr15_79838547_79902014	0/0	t0014	1690	1	1	0	0	0	0	copy fasta	MTHFS	chr15	79838547	79902014
MTHFS_chr15_79838547_79902014	0/0	t0015	1690	1	0	0	1	0	0	copy fasta	MTHFS	chr15	79838547	79902014
MTHFS_chr15_79838547_79902014	0/0	t0016	1690	1	1	0	0	0	0	copy fasta	MTHFS	chr15	79838547	79902014
MTHFS_chr15_79838547_79902014	0/0	t0017	1690	1	0	0	1	0	0	copy fasta	MTHFS	chr15	79838547	79902014
MTIF2_chr2_55231595_55274231	1/1	t0001	353	372	82	74	163	13	38	copy fasta	MTIF2	chr2	55231595	55274231
MTIF2_chr2_55231595_55274231	0/0	t0002	353	11	1	4	5	1	0	copy fasta	MTIF2	chr2	55231595	55274231
MTIF2_chr2_55231595_55274231	0/0	t0003	353	1	1	0	0	0	0	copy fasta	MTIF2	chr2	55231595	55274231
MTIF3_chr13_27430643_27455564	1/1	t0001	158	353	80	61	162	10	38	copy fasta	MTIF3	chr13	27430643	27455564
MTIF3_chr13_27430643_27455564	0/0	t0002	158	46	6	11	19	2	8	copy fasta	MTIF3	chr13	27430643	27455564
MTIF3_chr13_27430643_27455564	0/0	t0003	144	14	14	0	0	0	0	copy fasta	MTIF3	chr13	27430643	27455564
MTIF3_chr13_27430643_27455564	0/0	t0004	119	1	0	0	1	0	0	copy fasta	MTIF3	chr13	27430643	27455564
MTLN_chr2_110206529_110217547	1/1	t0001	257	354	63	64	165	18	42	copy fasta	MTLN	chr2	110206529	110217547
MTLN_chr2_110206529_110217547	0/0	t0002	221	41	20	12	9	0	0	copy fasta	MTLN	chr2	110206529	110217547
MTLN_chr2_110206529_110217547	0/0	t0003	221	1	1	0	0	0	0	copy fasta	MTLN	chr2	110206529	110217547
MTM1_chrX_150563621_150678143	1/1	t0001	1601	268	63	49	113	9	32	copy fasta	MTM1	chrX	150563621	150678143
MTM1_chrX_150563621_150678143	0/0	t0002	1600	4	4	0	0	0	0	copy fasta	MTM1	chrX	150563621	150678143
MTM1_chrX_150563621_150678143	0/0	t0003	1601	2	2	0	0	0	0	copy fasta	MTM1	chrX	150563621	150678143
MTM1_chrX_150563621_150678143	0/0	t0004	1601	2	0	0	2	0	0	copy fasta	MTM1	chrX	150563621	150678143
MTM1_chrX_150563621_150678143	0/0	t0005	1601	1	1	0	0	0	0	copy fasta	MTM1	chrX	150563621	150678143
MTMR10_chr15_30933941_30996628	0/0	t0001	2657	92	20	17	41	2	12	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	t0002	2648	52	22	15	3	5	7	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	t0003	2657	39	1	14	20	0	4	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	t0004	2652	20	11	1	8	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	t0005	2652	18	7	4	5	0	2	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	t0006	2657	10	9	1	0	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	t0007	2657	8	4	0	0	1	3	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	t0008	2652	8	0	3	0	1	4	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/1	t0009	2652	5	0	0	0	3	1	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	t0010	2657	5	4	1	0	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	t0011	2653	3	3	0	0	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	t0012	2648	2	2	0	0	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	t0013	2652	2	0	2	0	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	t0014	2648	1	1	0	0	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	t0015	2648	1	0	0	0	0	1	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	t0016	2653	1	1	0	0	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	t0017	2657	1	1	0	0	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	t0018	2657	1	1	0	0	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	t0019	2657	1	1	0	0	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	t0020	2652	1	0	0	1	0	0	copy fasta	MTMR10	chr15	30933941	30996628