JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTMR10_chr15_30933941_30996628	0/0	t0021	2652	1	0	1	0	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	t0022	2652	1	1	0	0	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	t0023	2657	1	1	0	0	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	t0024	2657	1	0	1	0	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	t0025	2657	1	1	0	0	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR10_chr15_30933941_30996628	0/0	t0026	2657	1	1	0	0	0	0	copy fasta	MTMR10	chr15	30933941	30996628
MTMR11_chr1_149923651_149941879	1/1	t0001	711	344	75	46	169	16	36	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/0	t0002	711	15	15	0	0	0	0	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/0	t0003	711	9	0	5	4	0	0	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/0	t0004	712	7	0	7	0	0	0	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/0	t0005	711	2	2	0	0	0	0	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/0	t0006	712	2	1	1	0	0	0	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/0	t0007	711	1	1	0	0	0	0	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/0	t0008	711	1	0	1	0	0	0	copy fasta	MTMR11	chr1	149923651	149941879
MTMR11_chr1_149923651_149941879	0/0	t0009	711	1	0	0	1	0	0	copy fasta	MTMR11	chr1	149923651	149941879
MTMR12_chr5_32222007_32317939	0/1	t0001	2910	86	9	13	44	7	12	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0002	2873	82	16	9	37	4	16	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	1/0	t0003	2873	50	1	13	27	2	6	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0004	2875	22	6	7	8	0	1	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0005	2875	9	0	1	8	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0006	2864	9	9	0	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0007	2871	8	7	0	0	0	1	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0008	2909	6	0	0	6	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0009	2873	5	0	0	5	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0010	2875	5	0	0	5	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0011	2910	5	0	0	4	0	1	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0012	2871	5	3	1	1	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0013	2871	5	0	1	0	1	3	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0014	2875	5	4	1	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0015	2908	4	0	1	2	0	1	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0016	2908	4	3	1	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0017	2962	3	2	1	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0018	3074	3	3	0	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0019	2875	2	0	0	2	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0020	2875	2	0	1	1	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0021	2909	2	0	0	2	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0022	2945	2	0	0	2	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0023	2860	2	0	1	0	0	1	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0024	2875	2	2	0	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0025	2899	2	2	0	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0026	2867	2	2	0	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0027	2942	2	2	0	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0028	2873	1	1	0	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0029	2917	1	0	1	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0030	2875	1	0	0	1	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0031	2910	1	0	0	1	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0032	2910	1	0	0	0	0	1	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0033	2849	1	0	0	1	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0034	2960	1	1	0	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0035	2917	1	0	1	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939