Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARHGEF9_chrX_63629967_63790214	0/0	t0008	3130	2	2	0	0	0	0	copy fasta	ARHGEF9	chrX	63629967	63790214
ARHGEF9_chrX_63629967_63790214	0/0	t0009	3130	2	2	0	0	0	0	copy fasta	ARHGEF9	chrX	63629967	63790214
ARHGEF9_chrX_63629967_63790214	0/0	t0010	3135	1	0	0	0	0	1	copy fasta	ARHGEF9	chrX	63629967	63790214
ARHGEF9_chrX_63629967_63790214	0/0	t0011	3132	1	0	0	0	0	1	copy fasta	ARHGEF9	chrX	63629967	63790214
ARHGEF9_chrX_63629967_63790214	0/0	t0012	3131	1	0	0	0	0	1	copy fasta	ARHGEF9	chrX	63629967	63790214
ARHGEF9_chrX_63629967_63790214	0/0	t0013	3131	1	0	0	0	0	1	copy fasta	ARHGEF9	chrX	63629967	63790214
ARHGEF9_chrX_63629967_63790214	0/0	t0014	3130	1	0	0	1	0	0	copy fasta	ARHGEF9	chrX	63629967	63790214
ARHGEF9_chrX_63629967_63790214	0/0	t0015	3113	1	0	0	1	0	0	copy fasta	ARHGEF9	chrX	63629967	63790214
ARHGEF9_chrX_63629967_63790214	0/0	t0016	3129	1	1	0	0	0	0	copy fasta	ARHGEF9	chrX	63629967	63790214
ARHGEF9_chrX_63629967_63790214	0/0	t0017	3130	1	0	1	0	0	0	copy fasta	ARHGEF9	chrX	63629967	63790214
ARHGEF9_chrX_63629967_63790214	0/0	t0018	3131	1	1	0	0	0	0	copy fasta	ARHGEF9	chrX	63629967	63790214
ARHGEF9_chrX_63629967_63790214	0/0	t0019	3129	1	1	0	0	0	0	copy fasta	ARHGEF9	chrX	63629967	63790214
ARHGEF9_chrX_63629967_63790214	0/0	t0020	3127	1	0	1	0	0	0	copy fasta	ARHGEF9	chrX	63629967	63790214
ARHGEF9_chrX_63629967_63790214	0/0	t0021	3127	1	1	0	0	0	0	copy fasta	ARHGEF9	chrX	63629967	63790214
ARHGEF9_chrX_63629967_63790214	0/0	t0022	3128	1	1	0	0	0	0	copy fasta	ARHGEF9	chrX	63629967	63790214
ARID1A_chr1_26691015_26787104	1/1	t0001	1738	125	45	35	11	10	22	copy fasta	ARID1A	chr1	26691015	26787104
ARID1A_chr1_26691015_26787104	0/0	t0002	1741	8	0	1	3	3	1	copy fasta	ARID1A	chr1	26691015	26787104
ARID1A_chr1_26691015_26787104	0/0	t0003	1741	4	0	3	0	1	0	copy fasta	ARID1A	chr1	26691015	26787104
ARID1A_chr1_26691015_26787104	0/0	t0004	1739	3	0	3	0	0	0	copy fasta	ARID1A	chr1	26691015	26787104
ARID1A_chr1_26691015_26787104	0/0	t0005	1736	2	0	2	0	0	0	copy fasta	ARID1A	chr1	26691015	26787104
ARID1A_chr1_26691015_26787104	0/0	t0006	1738	2	2	0	0	0	0	copy fasta	ARID1A	chr1	26691015	26787104
ARID1A_chr1_26691015_26787104	0/0	t0007	1739	1	1	0	0	0	0	copy fasta	ARID1A	chr1	26691015	26787104
ARID1A_chr1_26691015_26787104	0/0	t0008	1738	1	0	0	0	0	1	copy fasta	ARID1A	chr1	26691015	26787104
ARID1B_chr6_156772378_157215779	1/1	t0001	3192	92	30	21	15	10	14	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	t0002	3192	13	12	1	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	t0003	3195	9	8	1	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	t0004	3193	5	4	1	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	t0005	3197	4	4	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	t0006	3197	4	4	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	t0007	3192	3	3	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	t0008	3194	3	3	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	t0009	3195	3	3	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	t0010	3193	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	t0011	3193	1	0	0	1	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	t0012	3192	1	0	1	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	t0013	3196	1	0	1	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	t0014	3196	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	t0015	3172	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	t0016	3197	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	t0017	3197	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	t0018	3192	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	t0019	3194	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	t0020	3196	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	t0021	3196	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	t0022	3197	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID1B_chr6_156772378_157215779	0/0	t0023	3197	1	1	0	0	0	0	copy fasta	ARID1B	chr6	156772378	157215779
ARID2_chr12_45724706_45913037	1/1	t0001	3091	253	29	59	123	12	28	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	t0002	3092	21	20	1	0	0	0	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	t0003	3091	6	0	0	0	0	6	copy fasta	ARID2	chr12	45724706	45913037
ARID2_chr12_45724706_45913037	0/0	t0004	3092	5	5	0	0	0	0	copy fasta	ARID2	chr12	45724706	45913037