JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTMR12_chr5_32222007_32317939	0/0	t0036	2873	1	1	0	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0037	2908	1	1	0	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0038	2860	1	1	0	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0039	2860	1	1	0	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0040	2871	1	1	0	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0041	2867	1	1	0	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0042	3098	1	1	0	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0043	3072	1	1	0	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0044	2901	1	1	0	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0045	2945	1	0	1	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0046	2910	1	0	0	1	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0047	2873	1	1	0	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0048	2936	1	0	1	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0049	2871	1	0	0	0	0	1	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0050	2841	1	0	0	1	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0051	2873	1	1	0	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0052	2871	1	0	1	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0053	2910	1	1	0	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0054	2867	1	1	0	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0055	2946	1	1	0	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0056	2873	1	1	0	0	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR12_chr5_32222007_32317939	0/0	t0057	2909	1	0	0	1	0	0	copy fasta	MTMR12	chr5	32222007	32317939
MTMR14_chr3_9644505_9707393	1/1	t0001	500	255	83	68	59	12	31	copy fasta	MTMR14	chr3	9644505	9707393
MTMR14_chr3_9644505_9707393	0/0	t0002	500	2	2	0	0	0	0	copy fasta	MTMR14	chr3	9644505	9707393
MTMR14_chr3_9644505_9707393	0/0	t0003	500	1	0	0	0	0	1	copy fasta	MTMR14	chr3	9644505	9707393
MTMR14_chr3_9644505_9707393	0/0	t0004	500	1	1	0	0	0	0	copy fasta	MTMR14	chr3	9644505	9707393
MTMR14_chr3_9644505_9707393	0/0	t0005	500	1	1	0	0	0	0	copy fasta	MTMR14	chr3	9644505	9707393
MTMR14_chr3_9644505_9707393	0/0	t0006	500	1	1	0	0	0	0	copy fasta	MTMR14	chr3	9644505	9707393
MTMR14_chr3_9644505_9707393	0/0	t0007	500	1	0	0	1	0	0	copy fasta	MTMR14	chr3	9644505	9707393
MTMR1_chrX_150688396_150770108	0/0	t0001	2514	87	2	16	62	2	5	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0002	2514	46	2	14	20	1	9	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0003	2514	42	18	4	11	2	7	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0004	2518	15	14	1	0	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0005	2514	11	10	1	0	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0006	2515	9	3	2	0	1	3	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0007	2518	7	7	0	0	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0008	2514	6	6	0	0	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0009	2513	5	2	1	0	2	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0010	2518	5	5	0	0	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0011	2517	2	0	1	0	0	1	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0012	2514	2	1	1	0	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0013	2514	2	0	0	2	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0014	2519	2	0	0	0	0	2	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0015	2514	2	0	0	2	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0016	2515	2	0	0	2	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0017	2514	2	0	0	2	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0018	2514	1	0	0	0	0	1	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0019	2514	1	0	0	1	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0020	2514	1	0	0	0	0	1	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0021	2514	1	1	0	0	0	0	copy fasta	MTMR1	chrX	150688396	150770108