JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTMR1_chrX_150688396_150770108	0/0	t0022	2518	1	0	1	0	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0023	2513	1	1	0	0	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0024	2519	1	1	0	0	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	1/0	t0025	2515	1	0	0	0	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0026	2514	1	0	0	1	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0027	2516	1	0	0	1	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0028	2518	1	0	0	1	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0029	2513	1	0	0	0	0	1	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0030	2514	1	0	0	1	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0031	2519	1	0	0	1	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0032	2511	1	0	0	0	1	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/1	t0033	2514	1	0	0	0	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0034	2518	1	0	0	0	0	1	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0035	2513	1	0	0	0	0	1	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0036	2515	1	0	0	1	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0037	2512	1	0	1	0	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0038	2515	1	0	1	0	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0039	2514	1	1	0	0	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR1_chrX_150688396_150770108	0/0	t0040	2513	1	0	0	1	0	0	copy fasta	MTMR1	chrX	150688396	150770108
MTMR2_chr11_95827880_95929107	1/0	t0001	2564	117	20	24	60	2	10	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/1	t0002	2564	88	8	12	57	4	6	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	t0003	2561	65	38	13	8	1	5	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	t0004	2564	23	5	3	14	0	1	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	t0005	2564	17	9	1	0	0	7	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	t0006	2564	7	0	0	1	0	6	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	t0007	2564	5	0	1	3	0	1	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	t0008	2564	4	4	0	0	0	0	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	t0009	2564	3	3	0	0	0	0	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	t0010	2564	1	1	0	0	0	0	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	t0011	2564	1	1	0	0	0	0	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	t0012	2564	1	0	1	0	0	0	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	t0013	2564	1	1	0	0	0	0	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	t0014	2564	1	1	0	0	0	0	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	t0015	2564	1	0	0	1	0	0	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	t0016	2564	1	1	0	0	0	0	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	t0017	2564	1	0	0	0	1	0	copy fasta	MTMR2	chr11	95827880	95929107
MTMR2_chr11_95827880_95929107	0/0	t0018	2564	1	0	1	0	0	0	copy fasta	MTMR2	chr11	95827880	95929107
MTMR3_chr22_29878174_30035868	0/0	t0001	5391	28	2	7	14	1	4	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0002	5386	20	0	5	9	1	5	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0003	5387	16	1	11	0	1	3	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0004	5395	13	0	2	7	3	1	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0005	5396	12	0	4	6	2	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0006	5396	12	4	1	6	1	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0007	5392	11	3	2	6	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/1	t0008	5386	11	0	6	3	0	1	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0009	5387	11	0	3	7	0	1	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0010	5389	10	10	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0011	5390	9	7	2	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0012	5385	9	0	0	8	0	1	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0013	5391	9	3	2	2	0	2	copy fasta	MTMR3	chr22	29878174	30035868