JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTMR3_chr22_29878174_30035868	0/0	t0014	5395	8	2	1	3	1	1	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0015	5393	7	3	0	4	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0016	5397	7	0	2	5	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0017	5391	6	2	1	2	0	1	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0018	5391	6	0	3	0	0	3	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0019	5391	5	5	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0020	5392	5	1	2	2	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0021	5391	5	0	3	0	2	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0022	5393	4	4	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0023	5385	4	0	0	3	0	1	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0024	5391	4	0	0	4	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0025	5396	4	0	1	3	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0026	5392	3	3	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0027	5390	3	0	0	3	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0028	5392	3	3	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0029	5391	3	3	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0030	5386	3	1	0	0	1	1	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0031	5392	3	1	1	1	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0032	5397	3	0	0	3	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0033	5391	3	2	1	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0034	5397	3	3	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0035	5391	2	0	2	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0036	5391	2	2	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0037	5386	2	0	0	2	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0038	5387	2	0	1	0	0	1	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0039	5389	2	1	1	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0040	5388	2	2	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0041	5388	2	0	1	1	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0042	5387	2	0	1	0	1	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0043	5393	2	0	0	1	0	1	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0044	5392	2	0	0	2	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0045	5390	2	0	0	2	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0046	5396	2	0	0	2	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0047	5393	2	2	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0048	5396	1	0	0	0	0	1	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0049	5393	1	1	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0050	5390	1	1	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0051	5389	1	1	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0052	5389	1	1	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0053	5392	1	1	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0054	5391	1	0	0	1	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0055	5392	1	0	0	0	1	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	1/0	t0056	5391	1	0	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0057	5391	1	0	1	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0058	5396	1	0	0	1	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0059	5387	1	0	0	0	1	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0060	5391	1	1	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0061	5387	1	0	1	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0062	5386	1	0	0	1	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0063	5386	1	1	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868