JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTMR3_chr22_29878174_30035868	0/0	t0064	5395	1	1	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0065	5391	1	0	1	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0066	5390	1	0	1	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0067	5391	1	0	0	1	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0068	5395	1	0	0	1	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0069	5392	1	1	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0070	5387	1	0	0	0	0	1	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0071	5391	1	1	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0072	5387	1	0	0	1	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0073	5386	1	0	1	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0074	5393	1	1	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0075	5393	1	1	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0076	5395	1	0	0	1	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0077	5391	1	1	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0078	5386	1	1	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0079	5392	1	0	0	0	0	1	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0080	5388	1	1	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0081	5389	1	0	1	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0082	5397	1	0	0	1	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0083	5392	1	0	0	1	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0084	5393	1	0	0	1	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0085	5393	1	0	0	0	1	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0086	5395	1	1	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0087	5391	1	0	0	0	0	1	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0088	5396	1	0	0	0	0	1	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0089	5395	1	0	0	0	1	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0090	5396	1	0	0	1	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0091	5392	1	1	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR3_chr22_29878174_30035868	0/0	t0092	5392	1	1	0	0	0	0	copy fasta	MTMR3	chr22	29878174	30035868
MTMR4_chr17_58484537_58519638	1/1	t0001	2358	266	63	54	106	9	32	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	0/0	t0002	2358	68	12	12	35	3	6	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	0/0	t0003	2358	4	4	0	0	0	0	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	0/0	t0004	2358	3	3	0	0	0	0	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	0/0	t0005	2358	3	3	0	0	0	0	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	0/0	t0006	2358	2	2	0	0	0	0	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	0/0	t0007	2358	1	0	0	1	0	0	copy fasta	MTMR4	chr17	58484537	58519638
MTMR4_chr17_58484537_58519638	0/0	t0008	2358	1	1	0	0	0	0	copy fasta	MTMR4	chr17	58484537	58519638
MTMR6_chr13_25241222_25292488	0/1	t0001	3248	116	13	25	61	6	10	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	t0002	3252	57	0	11	36	0	10	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	t0003	3248	53	7	8	32	0	6	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	t0004	3251	23	1	6	11	2	3	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	1/0	t0005	3252	22	17	4	0	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	t0006	3252	15	13	2	0	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	t0007	3252	13	0	0	12	0	1	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	t0008	3253	8	8	0	0	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	t0009	3252	6	5	0	0	0	1	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	t0010	3252	6	6	0	0	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	t0011	3248	5	5	0	0	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	t0012	3252	4	4	0	0	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	t0013	3253	3	2	1	0	0	0	copy fasta	MTMR6	chr13	25241222	25292488