JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTMR6_chr13_25241222_25292488	0/0	t0014	3248	2	2	0	0	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	t0015	3252	2	2	0	0	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	t0016	3252	1	0	0	0	0	1	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	t0017	3252	1	0	0	1	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	t0018	3251	1	0	0	1	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	t0019	3252	1	0	1	0	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	t0020	3248	1	0	0	1	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	t0021	3252	1	1	0	0	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	t0022	3252	1	0	1	0	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	t0023	3248	1	1	0	0	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	t0024	3248	1	0	1	0	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	t0025	3251	1	1	0	0	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR6_chr13_25241222_25292488	0/0	t0026	3252	1	0	0	1	0	0	copy fasta	MTMR6	chr13	25241222	25292488
MTMR7_chr8_17291794_17418351	0/0	t0001	3130	42	19	4	15	1	3	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0002	3131	30	9	2	17	0	2	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0003	3128	30	0	9	14	1	6	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0004	3130	30	2	9	18	0	1	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	1/0	t0005	3128	27	6	4	11	2	3	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0006	3131	21	0	3	10	0	8	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0007	3108	18	0	5	12	0	1	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0008	3131	16	15	1	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0009	3128	12	8	0	4	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0010	3108	12	0	3	5	0	4	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0011	3135	11	7	3	0	1	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0012	3131	9	8	1	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0013	3128	8	0	0	7	0	1	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0014	3131	8	1	4	0	1	2	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0015	3135	8	1	2	0	1	4	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0016	3128	7	7	0	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0017	3128	6	0	0	1	3	2	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0018	3131	6	0	2	0	0	4	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0019	3128	5	0	4	0	0	1	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/1	t0020	3128	4	0	2	0	1	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0021	3128	3	0	1	0	2	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0022	3131	2	1	1	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0023	3132	2	0	0	2	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0024	3131	2	0	1	0	1	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0025	3130	2	2	0	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0026	3108	2	0	2	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0027	3135	2	0	0	2	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0028	3128	1	0	0	0	0	1	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0029	3128	1	0	0	0	1	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0030	3131	1	0	1	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0031	3134	1	1	0	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0032	3132	1	0	1	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0033	3128	1	0	0	0	1	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0034	3128	1	0	0	1	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0035	3128	1	0	0	1	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0036	3131	1	0	0	1	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0037	3130	1	0	0	1	0	0	copy fasta	MTMR7	chr8	17291794	17418351