JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTMR7_chr8_17291794_17418351	0/0	t0038	3128	1	0	0	1	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0039	3131	1	1	0	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0040	3128	1	0	0	1	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0041	3108	1	0	0	0	0	1	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0042	3131	1	0	0	1	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0043	3135	1	0	0	1	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0044	3130	1	0	1	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0045	3130	1	1	0	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0046	3130	1	0	0	1	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0047	3108	1	0	0	0	1	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0048	3108	1	0	0	0	1	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0049	3131	1	0	1	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0050	3131	1	0	0	1	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0051	3128	1	0	1	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0052	3132	1	0	0	1	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0053	3128	1	0	0	1	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0054	3128	1	0	0	1	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0055	3128	1	0	1	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0056	3131	1	1	0	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0057	3130	1	0	1	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0058	3108	1	0	0	1	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0059	3131	1	0	0	1	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0060	3131	1	0	0	1	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0061	3130	1	0	1	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR7_chr8_17291794_17418351	0/0	t0062	3130	1	0	1	0	0	0	copy fasta	MTMR7	chr8	17291794	17418351
MTMR8_chrX_64263081_64400452	1/1	t0001	546	190	66	33	68	5	16	copy fasta	MTMR8	chrX	64263081	64400452
MTMR9_chr8_11279816_11333146	0/0	t0001	5435	83	6	16	52	0	9	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	1/0	t0002	5432	46	8	20	0	6	11	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0003	5433	32	18	6	6	1	1	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0004	5425	31	1	8	20	0	2	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0005	5434	22	0	0	20	0	2	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0006	5441	5	5	0	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0007	5433	5	5	0	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0008	5438	5	5	0	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0009	5426	5	0	0	5	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0010	5434	4	0	1	1	1	1	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0011	5434	4	0	1	3	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0012	5434	4	0	3	0	1	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0013	5438	4	4	0	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0014	5433	4	0	4	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0015	5434	3	0	0	0	0	3	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0016	5436	3	0	1	2	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0017	5444	3	3	0	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0018	5441	3	3	0	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0019	5434	3	3	0	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0020	5438	3	3	0	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0021	5431	2	2	0	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0022	5432	2	0	0	1	0	1	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0023	5425	2	0	0	2	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0024	5436	2	0	0	2	0	0	copy fasta	MTMR9	chr8	11279816	11333146