JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
MTMR9_chr8_11279816_11333146	0/0	t0025	5426	2	0	0	2	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0026	5427	2	2	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0027	5426	2	0	0	2	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0028	5435	2	2	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0029	5442	1	1	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0030	5460	1	1	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0031	5435	1	1	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0032	5443	1	1	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0033	5442	1	1	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0034	5434	1	1	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0035	5442	1	1	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0036	5437	1	1	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0037	5438	1	1	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0038	5425	1	0	0	1	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0039	5438	1	0	1	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0040	5437	1	1	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0041	5433	1	0	0	0	1	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/1	t0042	5433	1	0	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0043	5431	1	0	1	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0044	5430	1	0	1	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0045	5432	1	1	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0046	5425	1	0	1	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0047	5426	1	0	0	1	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0048	5425	1	0	1	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0049	5425	1	0	0	1	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0050	5426	1	0	0	1	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0051	5433	1	1	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0052	5438	1	0	1	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0053	5457	1	1	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0054	5442	1	1	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0055	5435	1	0	0	0	1	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0056	5435	1	1	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0057	5435	1	0	0	1	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0058	5435	1	0	0	1	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0059	5441	1	1	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0060	5438	1	1	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0061	5437	1	0	0	0	1	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0062	5435	1	0	1	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0063	5435	1	0	0	1	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0064	5435	1	0	0	1	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0065	5435	1	0	0	1	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0066	5435	1	0	0	1	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0067	5437	1	0	0	1	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0068	5435	1	0	0	1	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0069	5434	1	0	0	0	1	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0070	5432	1	0	0	0	1	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0071	5433	1	1	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0072	5439	1	1	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0073	5435	1	0	0	0	1	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0074	5439	1	0	0	1	0	copy fasta	MTMR9	chr8	11279816	11333146