JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTMR9_chr8_11279816_11333146	0/0	t0075	5440	1	1	0	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0076	5434	1	0	0	0	0	1	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0077	5438	1	1	0	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0078	5434	1	0	0	1	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0079	5432	1	0	0	0	1	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0080	5434	1	0	0	0	0	1	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0081	5435	1	0	1	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0082	5433	1	1	0	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0083	5435	1	1	0	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0084	5435	1	0	0	1	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0085	5441	1	1	0	0	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0086	5426	1	0	0	1	0	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0087	5433	1	0	0	0	1	0	copy fasta	MTMR9	chr8	11279816	11333146
MTMR9_chr8_11279816_11333146	0/0	t0088	5432	1	0	0	0	1	0	copy fasta	MTMR9	chr8	11279816	11333146
MTNR1A_chr4_186528655_186560567	1/1	t0001	237	393	90	76	173	12	40	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	t0002	237	2	2	0	0	0	0	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1A_chr4_186528655_186560567	0/0	t0003	237	1	0	0	1	0	0	copy fasta	MTNR1A	chr4	186528655	186560567
MTNR1B_chr11_92964651_92987782	0/1	t0001	546	248	52	41	110	10	34	copy fasta	MTNR1B	chr11	92964651	92987782
MTNR1B_chr11_92964651_92987782	1/0	t0002	546	139	27	27	63	8	13	copy fasta	MTNR1B	chr11	92964651	92987782
MTNR1B_chr11_92964651_92987782	0/0	t0003	546	11	11	0	0	0	0	copy fasta	MTNR1B	chr11	92964651	92987782
MTNR1B_chr11_92964651_92987782	0/0	t0004	546	2	2	0	0	0	0	copy fasta	MTNR1B	chr11	92964651	92987782
MTNR1B_chr11_92964651_92987782	0/0	t0005	546	1	0	0	0	0	1	copy fasta	MTNR1B	chr11	92964651	92987782
MTNR1B_chr11_92964651_92987782	0/0	t0006	546	1	0	0	1	0	0	copy fasta	MTNR1B	chr11	92964651	92987782
MTO1_chr6_73456737_73514236	0/0	t0001	9300	50	16	6	20	3	5	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0002	9318	29	0	4	21	2	2	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0003	9312	24	0	8	14	0	2	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0004	9307	22	0	6	16	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0005	8620	17	0	3	12	0	2	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/1	t0006	9300	17	1	5	3	2	5	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0007	9301	16	3	0	11	1	1	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0008	8619	10	7	0	3	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0009	9301	9	6	1	2	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0010	9314	8	6	2	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0011	9319	8	0	3	3	0	2	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0012	9300	7	0	3	4	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0013	9300	7	0	5	0	2	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0014	9315	6	0	0	6	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0015	9314	6	0	0	6	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0016	9313	6	1	0	5	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0017	8620	4	4	0	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0018	9300	4	0	0	4	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0019	9312	4	0	1	3	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0020	9310	4	4	0	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0021	9306	4	4	0	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	1/0	t0022	8620	3	2	0	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0023	9303	3	0	1	0	2	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0024	9301	3	0	0	0	0	3	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0025	9314	3	3	0	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0026	9317	3	0	1	2	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0027	9317	3	2	1	0	0	0	copy fasta	MTO1	chr6	73456737	73514236