JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTO1_chr6_73456737_73514236	0/0	t0028	9309	3	3	0	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0029	9307	3	0	0	3	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0030	9301	2	2	0	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0031	8620	2	0	2	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0032	9308	2	0	0	2	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0033	9313	2	0	0	2	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0034	9300	2	0	1	0	1	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0035	9303	2	1	0	1	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0036	9300	2	0	0	2	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0037	9313	2	0	0	2	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0038	9317	2	0	2	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0039	9319	2	0	0	2	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0040	9300	2	0	1	0	1	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0041	8621	1	0	1	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0042	8619	1	0	0	1	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0043	8621	1	0	0	0	0	1	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0044	8622	1	0	1	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0045	8619	1	1	0	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0046	8619	1	1	0	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0047	8617	1	1	0	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0048	8620	1	1	0	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0049	8620	1	0	0	1	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0050	9300	1	0	0	1	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0051	9307	1	0	1	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0052	9314	1	0	1	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0053	9314	1	1	0	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0054	9320	1	0	0	0	0	1	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0055	9307	1	0	0	1	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0056	9309	1	0	0	1	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0057	9315	1	0	0	1	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0058	9315	1	0	0	1	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0059	9308	1	0	0	1	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0060	9301	1	0	0	1	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0061	9306	1	0	0	1	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0062	9314	1	1	0	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0063	9319	1	0	1	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0064	9318	1	0	1	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0065	9301	1	0	0	0	1	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0066	9300	1	0	0	1	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0067	9301	1	0	0	1	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0068	9300	1	0	0	1	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0069	9300	1	1	0	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0070	9301	1	1	0	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0071	9317	1	0	1	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0072	9301	1	0	0	1	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0073	9302	1	0	1	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0074	9300	1	0	0	1	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0075	9300	1	0	0	1	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0076	9302	1	1	0	0	0	0	copy fasta	MTO1	chr6	73456737	73514236
MTO1_chr6_73456737_73514236	0/0	t0077	9301	1	0	0	0	0	1	copy fasta	MTO1	chr6	73456737	73514236